Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QA442_RS03685 Genome accession   NZ_CP121861
Coordinates   717849..719231 (+) Length   460 a.a.
NCBI ID   WP_095431987.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712849..724231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS03665 (QA442_03665) - 714000..714653 (-) 654 WP_014665564.1 YigZ family protein -
  QA442_RS03670 (QA442_03670) degS 714870..716027 (+) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  QA442_RS03675 (QA442_03675) degU 716110..716799 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QA442_RS03680 (QA442_03680) - 716897..717742 (+) 846 WP_095431988.1 DegV family protein -
  QA442_RS03685 (QA442_03685) comFA 717849..719231 (+) 1383 WP_095431987.1 ATP-dependent helicase ComFA Machinery gene
  QA442_RS03690 (QA442_03690) comFB 719300..719596 (+) 297 WP_014665560.1 late competence protein ComFB -
  QA442_RS03695 (QA442_03695) comFC 719560..720282 (+) 723 WP_141237723.1 double zinc ribbon domain-containing protein Machinery gene
  QA442_RS03700 (QA442_03700) - 720356..720775 (+) 420 WP_095431986.1 TIGR03826 family flagellar region protein -
  QA442_RS03705 (QA442_03705) flgM 720856..721122 (+) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  QA442_RS03710 (QA442_03710) flgN 721137..721619 (+) 483 WP_014665556.1 flagellar protein FlgN -
  QA442_RS03715 (QA442_03715) flgK 721638..723161 (+) 1524 WP_095431985.1 flagellar hook-associated protein FlgK -
  QA442_RS03720 (QA442_03720) flgL 723172..724068 (+) 897 WP_040081667.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52275.24 Da        Isoelectric Point: 10.1836

>NTDB_id=814882 QA442_RS03685 WP_095431987.1 717849..719231(+) (comFA) [Bacillus stercoris strain Mal05]
MKVPTEKNISFSRELQQTLQSRHLLRTELPFSDEMIEWHIKNGYITTENSISINKQGYRCNRCGQTDKRYFSFYHSFGKD
QLYCRSCIMMGRVSEEVPLYSWKEGDEQNWKSVKLTWGGKLSSGQQKAANILIEAISKREELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKARNGRLHSVRIPARHHRQPLPEPRFVWCGNWKKKLNRNKIPTAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAASFKDVNCRTATVHAEDKHRKEKVQRFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALIQIAGRTGRHKEHADGDVIFFHYGKTKSMLDAKKHIKEMNGLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=814882 QA442_RS03685 WP_095431987.1 717849..719231(+) (comFA) [Bacillus stercoris strain Mal05]
GTGAAGGTGCCAACTGAAAAGAACATTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGGAC
TGAACTCCCATTTTCCGATGAAATGATTGAATGGCATATCAAGAATGGCTATATCACCACTGAAAATTCTATATCAATAA
ATAAACAGGGCTATAGATGTAATAGGTGCGGCCAAACTGATAAGCGGTATTTTTCTTTTTATCACTCATTTGGAAAAGAT
CAGCTATATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGGAGATGA
ACAAAACTGGAAGTCTGTTAAGCTGACATGGGGCGGTAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATATTTTAATTG
AAGCAATATCAAAAAGAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGTAAAACAGAAATGCTATTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACTCCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTCATGA
TTTCCACCACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTTATGATCGTTGATGAGGTTGACGCTTTTCCGTAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCGCGGAACGGACGGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGCAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGACAGCGGTGAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGCAGGCCTGTTTTTTTATTCGTTCCCTCCGTTTCTATTCTAGAAAAGGCTGCTGC
GAGCTTTAAAGATGTTAATTGCCGAACCGCGACTGTGCATGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCGATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTTACGGTTCCCAAGGTGCAAACAGGTGTA
CTGGGAGCGGAATCTTCTATCTTTACGGAAAGCGCACTTATTCAAATCGCAGGAAGAACCGGCCGGCATAAAGAGCATGC
AGACGGCGATGTCATTTTCTTTCACTACGGCAAAACAAAGAGTATGCTCGATGCAAAAAAGCATATAAAAGAAATGAACG
GCTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

91.522

100

0.915