Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QA442_RS03675 Genome accession   NZ_CP121861
Coordinates   716110..716799 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus stercoris strain Mal05     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 711110..721799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS03655 (QA442_03655) - 711678..712754 (+) 1077 WP_069838605.1 MraY family glycosyltransferase -
  QA442_RS03660 (QA442_03660) tagV 712825..714000 (-) 1176 WP_095431989.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  QA442_RS03665 (QA442_03665) - 714000..714653 (-) 654 WP_014665564.1 YigZ family protein -
  QA442_RS03670 (QA442_03670) degS 714870..716027 (+) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  QA442_RS03675 (QA442_03675) degU 716110..716799 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QA442_RS03680 (QA442_03680) - 716897..717742 (+) 846 WP_095431988.1 DegV family protein -
  QA442_RS03685 (QA442_03685) comFA 717849..719231 (+) 1383 WP_095431987.1 ATP-dependent helicase ComFA Machinery gene
  QA442_RS03690 (QA442_03690) comFB 719300..719596 (+) 297 WP_014665560.1 late competence protein ComFB -
  QA442_RS03695 (QA442_03695) comFC 719560..720282 (+) 723 WP_141237723.1 double zinc ribbon domain-containing protein Machinery gene
  QA442_RS03700 (QA442_03700) - 720356..720775 (+) 420 WP_095431986.1 TIGR03826 family flagellar region protein -
  QA442_RS03705 (QA442_03705) flgM 720856..721122 (+) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  QA442_RS03710 (QA442_03710) flgN 721137..721619 (+) 483 WP_014665556.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=814881 QA442_RS03675 WP_003219701.1 716110..716799(+) (degU) [Bacillus stercoris strain Mal05]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=814881 QA442_RS03675 WP_003219701.1 716110..716799(+) (degU) [Bacillus stercoris strain Mal05]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTTGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCTAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGCTCTTACCTTCATCCGAAGGTTACGCATA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAACACGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTCTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1