Detailed information NTG0081488

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: YZOS03_RS02655
• Genome accession: NZ_AP023185
• Coordinates: 551631..552617 (+)
• Length: 328 a.a.
• NCBI ID: WP_064368766.1
• Uniprot ID: A0AAW9AQQ0
• Organism: Vibrio alginolyticus strain YZOS-03
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 546631..557617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YZOS03_RS02620 (YZOS03_04480)	ftsB	546641..546922 (+)	282	WP_005380907.1	cell division protein FtsB	-
YZOS03_RS02625 (YZOS03_04490)	ispD	546924..547631 (+)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
YZOS03_RS02630 (YZOS03_04500)	ispF	547646..548122 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
YZOS03_RS02635 (YZOS03_04510)	truD	548168..549211 (+)	1044	WP_064368767.1	tRNA pseudouridine(13) synthase TruD	-
YZOS03_RS02640 (YZOS03_04520)	surE	549211..549987 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
YZOS03_RS02645 (YZOS03_04530)	-	549987..550613 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
YZOS03_RS02650 (YZOS03_04540)	-	550627..551550 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
YZOS03_RS02655 (YZOS03_04550)	rpoS	551631..552617 (+)	987	WP_064368766.1	RNA polymerase sigma factor RpoS	Regulator
YZOS03_RS02660 (YZOS03_04560)	mutS	552699..555260 (-)	2562	WP_005380877.1	DNA mismatch repair protein MutS	-
YZOS03_RS02665 (YZOS03_04570)	pncC	555345..555827 (+)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
YZOS03_RS02670 (YZOS03_04580)	recA	556028..557071 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37422.35 Da
• Isoelectric Point: 4.7299

>NTDB_id=81488 YZOS03_RS02655 WP_064368766.1 551631..552617(+) (rpoS) [Vibrio alginolyticus strain YZOS-03]
MSISNTVTKVEEFAFDNASVKTIDNELERSSPTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=81488 YZOS03_RS02655 WP_064368766.1 551631..552617(+) (rpoS) [Vibrio alginolyticus strain YZOS-03]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCACCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAATAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854