Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS17_RS18655 Genome accession   NZ_CP121849
Coordinates   3974044..3974916 (+) Length   290 a.a.
NCBI ID   WP_201911980.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14386     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3969044..3979916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS17_RS18635 nadC 3969134..3969997 (+) 864 WP_139730941.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS17_RS18640 - 3970327..3970791 (+) 465 WP_107684404.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS17_RS18645 pilB 3970795..3972501 (+) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS17_RS18650 pilC 3972741..3973982 (+) 1242 WP_005355091.1 type II secretion system F family protein Machinery gene
  QBS17_RS18655 pilD 3974044..3974916 (+) 873 WP_201911980.1 A24 family peptidase Machinery gene
  QBS17_RS18660 coaE 3974930..3975544 (+) 615 WP_107684319.1 dephospho-CoA kinase -
  QBS17_RS18665 zapD 3975582..3976304 (+) 723 WP_005336141.1 cell division protein ZapD -
  QBS17_RS18670 yacG 3976314..3976508 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS17_RS18675 mutT 3976586..3976990 (-) 405 WP_107684321.1 8-oxo-dGTP diphosphatase MutT -
  QBS17_RS18680 secA 3977175..3979895 (-) 2721 WP_107684322.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32258.54 Da        Isoelectric Point: 6.3694

>NTDB_id=814753 QBS17_RS18655 WP_201911980.1 3974044..3974916(+) (pilD) [Aeromonas veronii strain ANYA 14386]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFTPDEEATAPECYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWSTLAALLLTWVLVTLTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTDKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
IGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814753 QBS17_RS18655 WP_201911980.1 3974044..3974916(+) (pilD) [Aeromonas veronii strain ANYA 14386]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
CCCCTGATGAGGAGGCCACTGCGCCAGAGTGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCAGGCTGGAGCA
CACTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCACCCTCACCTTCATCGATCTCGACAAAATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGACAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
ATCGGCGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.091

98.621

0.583
  pilD Vibrio campbellii strain DS40M4

54.704

98.966

0.541
  pilD Acinetobacter nosocomialis M2

52.33

96.207

0.503
  pilD Acinetobacter baumannii D1279779

51.971

96.207

0.5
  pilD Neisseria gonorrhoeae MS11

50

93.103

0.466