Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS09_RS10800 Genome accession   NZ_CP121848
Coordinates   2287630..2288502 (+) Length   290 a.a.
NCBI ID   WP_201911980.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14430     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282630..2293502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS09_RS10780 nadC 2282720..2283583 (+) 864 WP_139730941.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS09_RS10785 - 2283912..2284376 (+) 465 WP_107684404.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS09_RS10790 tapB 2284380..2286087 (+) 1708 Protein_2058 PilB family type IVa pilus assembly ATPase TapB -
  QBS09_RS10795 pilC 2286327..2287568 (+) 1242 WP_005355091.1 type II secretion system F family protein Machinery gene
  QBS09_RS10800 pilD 2287630..2288502 (+) 873 WP_201911980.1 A24 family peptidase Machinery gene
  QBS09_RS10805 coaE 2288516..2289130 (+) 615 WP_107684319.1 dephospho-CoA kinase -
  QBS09_RS10810 zapD 2289168..2289890 (+) 723 WP_005336141.1 cell division protein ZapD -
  QBS09_RS10815 yacG 2289900..2290094 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS09_RS10820 mutT 2290172..2290576 (-) 405 WP_279452815.1 8-oxo-dGTP diphosphatase MutT -
  QBS09_RS10825 secA 2290761..2293481 (-) 2721 WP_107684322.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32258.54 Da        Isoelectric Point: 6.3694

>NTDB_id=814718 QBS09_RS10800 WP_201911980.1 2287630..2288502(+) (pilD) [Aeromonas veronii strain ANYA 14430]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFTPDEEATAPECYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWSTLAALLLTWVLVTLTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTDKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
IGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814718 QBS09_RS10800 WP_201911980.1 2287630..2288502(+) (pilD) [Aeromonas veronii strain ANYA 14430]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
CCCCTGATGAGGAGGCCACTGCGCCAGAGTGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCAGGCTGGAGCA
CACTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCACCCTCACCTTCATCGATCTCGACAAAATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGACAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
ATCGGCGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.091

98.621

0.583
  pilD Vibrio campbellii strain DS40M4

54.704

98.966

0.541
  pilD Acinetobacter nosocomialis M2

52.33

96.207

0.503
  pilD Acinetobacter baumannii D1279779

51.971

96.207

0.5
  pilD Neisseria gonorrhoeae MS11

50

93.103

0.466