Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS03_RS18745 Genome accession   NZ_CP121846
Coordinates   4028966..4029838 (+) Length   290 a.a.
NCBI ID   WP_279486190.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 15110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4023966..4034838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS03_RS18725 nadC 4024081..4024944 (+) 864 WP_279486189.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS03_RS18730 - 4025260..4025706 (+) 447 WP_236271771.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS03_RS18735 pilB 4025716..4027422 (+) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS03_RS18740 pilC 4027663..4028904 (+) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS03_RS18745 pilD 4028966..4029838 (+) 873 WP_279486190.1 A24 family peptidase Machinery gene
  QBS03_RS18750 coaE 4029852..4030466 (+) 615 WP_201938611.1 dephospho-CoA kinase -
  QBS03_RS18755 zapD 4030504..4031226 (+) 723 WP_005336141.1 cell division protein ZapD -
  QBS03_RS18760 yacG 4031236..4031430 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS03_RS18765 mutT 4031508..4031912 (-) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  QBS03_RS18770 secA 4031987..4034707 (-) 2721 WP_279486191.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32172.50 Da        Isoelectric Point: 6.7414

>NTDB_id=814701 QBS03_RS18745 WP_279486190.1 4028966..4029838(+) (pilD) [Aeromonas veronii strain ANYA 15110]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSLAVAMVITPGWGTMAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814701 QBS03_RS18745 WP_279486190.1 4028966..4029838(+) (pilD) [Aeromonas veronii strain ANYA 15110]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTAATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCGCAGCTACTTCG
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACAGCCCTGCTCTCGCTCGCCGTAGCCATGGTCATAACCCCGGGCTGGGGCA
CGATGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCCCTGCTGTGGGGTGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACCGGCAAAGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCTCTGCCCATAATTCTGCTGCTCTCATCTTTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.189

98.621

0.603
  pilD Vibrio campbellii strain DS40M4

56.446

98.966

0.559
  pilD Acinetobacter baumannii D1279779

53.597

95.862

0.514
  pilD Acinetobacter nosocomialis M2

53.597

95.862

0.514
  pilD Neisseria gonorrhoeae MS11

49.248

91.724

0.452