Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RYX44_RS02095 Genome accession   NZ_CP136432
Coordinates   445993..446358 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain XM8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440993..451358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX44_RS02065 pyrR 441615..442127 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RYX44_RS02070 ruvX 442239..442673 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  RYX44_RS02075 - 442673..443242 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  RYX44_RS02080 - 443291..444184 (-) 894 WP_003162015.1 energy transducer TonB -
  RYX44_RS02085 gshB 444331..445284 (-) 954 WP_003100943.1 glutathione synthase -
  RYX44_RS02090 pilG 445539..445946 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  RYX44_RS02095 pilH 445993..446358 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  RYX44_RS02100 - 446409..446945 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  RYX44_RS02105 pilJ 447030..449078 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  RYX44_RS02110 pilK 449139..450014 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=814620 RYX44_RS02095 WP_003084587.1 445993..446358(+) (pilH) [Pseudomonas aeruginosa strain XM8]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=814620 RYX44_RS02095 WP_003084587.1 445993..446358(+) (pilH) [Pseudomonas aeruginosa strain XM8]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364