Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H1204_RS01695 Genome accession   NZ_AP023179
Coordinates   376091..377611 (-) Length   506 a.a.
NCBI ID   WP_180729550.1    Uniprot ID   -
Organism   Paraburkholderia sp. PGU19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371091..382611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1204_RS01670 (PPGU19_003350) - 371858..372493 (-) 636 WP_180729548.1 LON peptidase substrate-binding domain-containing protein -
  H1204_RS01675 (PPGU19_003360) rapZ 372558..373451 (-) 894 WP_180729549.1 RNase adapter RapZ -
  H1204_RS01680 (PPGU19_003370) hprK 373529..374497 (-) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  H1204_RS01685 (PPGU19_003380) - 374742..375257 (-) 516 WP_079484248.1 PTS sugar transporter subunit IIA -
  H1204_RS01690 (PPGU19_003390) raiA 375556..375915 (-) 360 WP_007579701.1 ribosome-associated translation inhibitor RaiA -
  H1204_RS01695 (PPGU19_003400) rpoN/rpoN1 376091..377611 (-) 1521 WP_180729550.1 RNA polymerase factor sigma-54 Machinery gene
  H1204_RS01700 (PPGU19_003410) lptB 377841..378623 (-) 783 WP_007579703.1 LPS export ABC transporter ATP-binding protein -
  H1204_RS01705 (PPGU19_003420) lptA 378620..379297 (-) 678 WP_180729551.1 lipopolysaccharide transport periplasmic protein LptA -
  H1204_RS01710 (PPGU19_003430) lptC 379319..379924 (-) 606 WP_180729552.1 LPS export ABC transporter periplasmic protein LptC -
  H1204_RS01715 (PPGU19_003440) - 379921..380481 (-) 561 WP_007579706.1 HAD family hydrolase -
  H1204_RS01720 (PPGU19_003450) kdsD 380481..381464 (-) 984 WP_180730836.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55664.54 Da        Isoelectric Point: 4.8325

>NTDB_id=81444 H1204_RS01695 WP_180729550.1 376091..377611(-) (rpoN/rpoN1) [Paraburkholderia sp. PGU19]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAIAQNPLLETEDDWIASPLRVAADGTVISQTSQNTSPEEMS
SSPPSSSSSTSSGESQEGGEPQGVDEYNGMGSDANSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILTDLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=81444 H1204_RS01695 WP_180729550.1 376091..377611(-) (rpoN/rpoN1) [Paraburkholderia sp. PGU19]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTTGAACTGCAGCAGGAAGTGTCGATGGCGATCGCCCAGAATCCGCTGCTCGAGACGGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTCGCGGCCGACGGCACGGTCATCTCGCAGACGTCGCAGAACACTTCGCCGGAAGAGATGTCG
AGTTCGCCGCCGTCCTCGTCGTCGTCAACGTCCTCTGGCGAAAGCCAGGAGGGCGGCGAGCCTCAAGGTGTGGACGAATA
CAACGGCATGGGTTCGGACGCGAACTCGGATGCGAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAACGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGCGTA
ACGGGAGCAAGCGCACGCGACCGCGCGCTCATCACGTTCCTGATCGAATCGCTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCACCGATCTCCCCGAAGAACTGGAAGTCGATACCGACGAACTCAACGCGGCGCTCGCCTTGCTGC
ACAGCTTCGACCCAGCGGGTGTGGGCGCGCGTTCGGCGTCCGAATGCCTGCGTTTGCAATTGTGCCGGCTCGAACCGTCG
CCCACGCGTACGCTCGCGCTCGATATCGTCGCGCATCATCTGGAACTGCTCGCCGCGCGCGACTTCACGCGACTGCGCAA
ATACCTGAAGGCAAGCGACGACGACCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCGGCCT
ATGGCAAGGCCGAGGCGGACTACGTGGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAACTGAAT
CCCGAAGTCGTGCCGAAACTGCGGATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGCGG
TTCGCTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCACGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTATCCACCGACACCGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACTGTTGCGAAATACCGCGAAGCACTGAAGATCCCGGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.798

100

0.668

Multiple sequence alignment