Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS10_RS07055 Genome accession   NZ_CP121802
Coordinates   1482094..1482966 (-) Length   290 a.a.
NCBI ID   WP_201889602.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BOND 14504     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477094..1487966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS10_RS07030 - 1478835..1480013 (+) 1179 WP_279452164.1 tetratricopeptide repeat protein -
  QBS10_RS07035 mutT 1480022..1480435 (+) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  QBS10_RS07040 yacG 1480496..1480690 (-) 195 WP_279452165.1 DNA gyrase inhibitor YacG -
  QBS10_RS07045 zapD 1480700..1481422 (-) 723 WP_026141277.1 cell division protein ZapD -
  QBS10_RS07050 coaE 1481460..1482074 (-) 615 WP_126880609.1 dephospho-CoA kinase -
  QBS10_RS07055 pilD 1482094..1482966 (-) 873 WP_201889602.1 A24 family peptidase Machinery gene
  QBS10_RS07060 pilC 1482989..1484230 (-) 1242 WP_279452166.1 type II secretion system F family protein Machinery gene
  QBS10_RS07065 pilB 1484346..1486061 (-) 1716 WP_185450531.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS10_RS07070 - 1486052..1486492 (-) 441 WP_010635961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS10_RS07075 nadC 1486814..1487671 (-) 858 WP_010635962.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32550.91 Da        Isoelectric Point: 6.7410

>NTDB_id=814362 QBS10_RS07055 WP_201889602.1 1482094..1482966(-) (pilD) [Aeromonas dhakensis strain BOND 14504]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814362 QBS10_RS07055 WP_201889602.1 1482094..1482966(-) (pilD) [Aeromonas dhakensis strain BOND 14504]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTATTGCTGCTCTCCTCCCTG
GTCGGCGCCATCATAGGGATCAGTCTCATCCTGCTGCGCAACCACCATCAGAACAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.888

98.621

0.61
  pilD Vibrio campbellii strain DS40M4

57.143

98.966

0.566
  pilD Acinetobacter baumannii D1279779

54.577

97.931

0.534
  pilD Acinetobacter nosocomialis M2

54.577

97.931

0.534
  pilD Neisseria gonorrhoeae MS11

49.084

94.138

0.462