Detailed information NTG0081429

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: R8474_RS10565
• Genome accession: NZ_AP026914
• Coordinates: 2075362..2076459 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266666.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2070362..2081459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8474_RS10540 (PC0003_20510)	pgsA	2070883..2071428 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
R8474_RS10545 (PC0003_20520)	rodZ	2071439..2072260 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
R8474_RS10550 (PC0003_20530)	yfmH	2072302..2073585 (-)	1284	WP_000170185.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
R8474_RS10555 (PC0003_20540)	yfmF	2073582..2074832 (-)	1251	WP_000424272.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
R8474_RS10560 (PC0003_20550)	yaaA	2074991..2075359 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
R8474_RS10565 (PC0003_20560)	recF	2075362..2076459 (+)	1098	WP_000266666.1	DNA replication/repair protein RecF	Machinery gene
R8474_RS10570 (PC0003_20570)	guaB	2076510..2077988 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
R8474_RS10575 (PC0003_20580)	trpS	2078140..2079165 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
R8474_RS10580 (PC0003_20590)	-	2079371..2080993 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41915.99 Da
• Isoelectric Point: 8.6711

>NTDB_id=81429 R8474_RS10565 WP_000266666.1 2075362..2076459(+) (recF) [Streptococcus pneumoniae strain PZ900700003]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSKSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=81429 R8474_RS10565 WP_000266666.1 2075362..2076459(+) (recF) [Streptococcus pneumoniae strain PZ900700003]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAAATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.178	100	0.992
recF	Bacillus subtilis subsp. subtilis str. 168	45.628	100	0.458