Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS06_RS02545 Genome accession   NZ_CP121798
Coordinates   366482..367354 (+) Length   290 a.a.
NCBI ID   WP_041216966.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain YURI 17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361482..372354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS06_RS02525 nadC 361778..362635 (+) 858 WP_041216965.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS06_RS02530 - 362958..363389 (+) 432 WP_041216993.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS06_RS02535 pilB 363396..365102 (+) 1707 WP_029302067.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS06_RS02540 pilC 365218..366459 (+) 1242 WP_279451704.1 type II secretion system F family protein Machinery gene
  QBS06_RS02545 pilD 366482..367354 (+) 873 WP_041216966.1 A24 family peptidase Machinery gene
  QBS06_RS02550 coaE 367374..367988 (+) 615 WP_041216967.1 dephospho-CoA kinase -
  QBS06_RS02555 zapD 368026..368748 (+) 723 WP_024945431.1 cell division protein ZapD -
  QBS06_RS02560 yacG 368758..368952 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  QBS06_RS02565 mutT 369013..369426 (-) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  QBS06_RS02570 - 369435..370619 (-) 1185 WP_041216969.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32428.74 Da        Isoelectric Point: 6.4806

>NTDB_id=814277 QBS06_RS02545 WP_041216966.1 366482..367354(+) (pilD) [Aeromonas hydrophila strain YURI 17]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETLPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCSECQAPISARYPLVELLTALLSLVVAATFAPGWSLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814277 QBS06_RS02545 WP_041216966.1 366482..367354(+) (pilD) [Aeromonas hydrophila strain YURI 17]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACTGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCCCGTTCTGCCTGTCCCCATTGCGGCCACGCC
ATCACGGCTATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGACGCTGCAGTGAATGCCAGGCACCCATATC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGTTGGAGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAATTTGGCTGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGCTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCACTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.538

98.621

0.607
  pilD Vibrio campbellii strain DS40M4

56.294

98.621

0.555
  pilD Acinetobacter baumannii D1279779

54.225

97.931

0.531
  pilD Acinetobacter nosocomialis M2

54.225

97.931

0.531
  pilD Neisseria gonorrhoeae MS11

49.084

94.138

0.462