Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QBJ73_RS08295 Genome accession   NZ_CP121776
Coordinates   1746293..1747861 (-) Length   522 a.a.
NCBI ID   WP_010325696.1    Uniprot ID   A0AAJ6IF95
Organism   Acinetobacter johnsonii strain AYTCM     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741293..1752861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS08280 (QBJ73_08285) gpmI 1742110..1743657 (+) 1548 WP_010325693.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  QBJ73_RS08285 (QBJ73_08290) - 1743676..1744851 (+) 1176 WP_010325694.1 S41 family peptidase -
  QBJ73_RS08290 (QBJ73_08295) pilR 1744856..1746220 (-) 1365 WP_308469656.1 sigma-54 dependent transcriptional regulator Regulator
  QBJ73_RS08295 (QBJ73_08300) pilS 1746293..1747861 (-) 1569 WP_010325696.1 PAS domain-containing sensor histidine kinase Regulator
  QBJ73_RS08300 (QBJ73_08305) - 1747883..1748518 (-) 636 WP_010325697.1 response regulator -
  QBJ73_RS08305 (QBJ73_08310) - 1748734..1749789 (+) 1056 WP_010325698.1 serine hydrolase -
  QBJ73_RS08310 (QBJ73_08315) thrC 1749875..1751014 (-) 1140 WP_010325699.1 threonine synthase -
  QBJ73_RS08315 (QBJ73_08320) - 1751080..1752384 (-) 1305 WP_010325700.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59616.13 Da        Isoelectric Point: 6.4937

>NTDB_id=814169 QBJ73_RS08295 WP_010325696.1 1746293..1747861(-) (pilS) [Acinetobacter johnsonii strain AYTCM]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPILYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIIDVISLSLLTFATDGPNLQLSLLFVITIFASCVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAHDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLQNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIHIRVYSYKNLVHIDVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=814169 QBJ73_RS08295 WP_010325696.1 1746293..1747861(-) (pilS) [Acinetobacter johnsonii strain AYTCM]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTTTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGCTGTTTGTTGTTGGTTTATCTACTGACCTATGAGCAGTTGTTTTCAAATTATCAATATCCAATATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCATCGATGTCATTAGCCTCAGCTTACTCACTTTCGCCACCGACGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCTCTTGTGTATTGGTCGATAAACAAAAAGCACTCATCATTACCTTGATTGCTGTGA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGATCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCAGCCTGTGCATTATTGGGTATCTCCCCGATTTATGCTCACGATAAA
TATCCTTTGTACAAAGCACAGCCTGATTTATTTGAACTCCTCAAATTCGACCAACTGAAGAATGGAGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAACCAAACACTGACCTTATTCG
TCCTACAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGTATT
GCCCATGAAATCCGCAATCCATTGGCTGCCATCACCCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACAGAACATGATCGCCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCAACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCACATTCGAGTCTATAGCTATAAAAACCTCGTCCACATTG
ATGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.077

99.808

0.6