Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QBJ73_RS04940 Genome accession   NZ_CP121776
Coordinates   1008969..1009616 (+) Length   215 a.a.
NCBI ID   WP_010327610.1    Uniprot ID   A0A1T1J305
Organism   Acinetobacter johnsonii strain AYTCM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 993523..1021797 1008969..1009616 within 0


Gene organization within MGE regions


Location: 993523..1021797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS04880 (QBJ73_04885) hmpA 994421..995629 (+) 1209 WP_178895970.1 NO-inducible flavohemoprotein -
  QBJ73_RS04885 (QBJ73_04890) - 995719..996168 (+) 450 WP_004977913.1 Rrf2 family transcriptional regulator -
  QBJ73_RS04890 (QBJ73_04895) yihA 996272..997132 (+) 861 WP_148825435.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QBJ73_RS04895 (QBJ73_04900) - 997273..998217 (+) 945 WP_308469567.1 metal-dependent hydrolase -
  QBJ73_RS04900 (QBJ73_04905) - 998273..999532 (-) 1260 WP_308469568.1 dicarboxylate/amino acid:cation symporter -
  QBJ73_RS04905 (QBJ73_04910) - 999763..1000635 (-) 873 WP_004691343.1 acyl-CoA thioesterase II -
  QBJ73_RS04910 (QBJ73_04915) plsB 1000928..1003501 (+) 2574 WP_005401290.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  QBJ73_RS04915 (QBJ73_04920) - 1003614..1003991 (-) 378 WP_029575123.1 hypothetical protein -
  QBJ73_RS04920 (QBJ73_04925) - 1004208..1005533 (-) 1326 WP_020846983.1 ISNCY family transposase -
  QBJ73_RS04925 (QBJ73_04930) - 1005663..1005896 (-) 234 WP_029575124.1 DUF6500 family protein -
  QBJ73_RS04930 (QBJ73_04935) - 1006088..1006903 (-) 816 WP_010327608.1 NAD-dependent epimerase/dehydratase family protein -
  QBJ73_RS04935 (QBJ73_04940) recG 1006937..1008982 (+) 2046 WP_010327609.1 ATP-dependent DNA helicase RecG -
  QBJ73_RS04940 (QBJ73_04945) comF 1008969..1009616 (+) 648 WP_010327610.1 ComF family protein Machinery gene
  QBJ73_RS04945 (QBJ73_04950) - 1009617..1010021 (-) 405 WP_010327611.1 NUDIX domain-containing protein -
  QBJ73_RS04950 (QBJ73_04955) - 1010018..1010617 (-) 600 WP_010327612.1 TIGR00730 family Rossman fold protein -
  QBJ73_RS04955 (QBJ73_04960) - 1010770..1011783 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  QBJ73_RS04960 (QBJ73_04965) - 1011865..1012152 (-) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  QBJ73_RS04965 (QBJ73_04970) - 1012164..1012799 (-) 636 WP_010327613.1 phospholipid-binding protein MlaC -
  QBJ73_RS04970 (QBJ73_04975) - 1012820..1013494 (-) 675 WP_010327614.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QBJ73_RS04975 (QBJ73_04980) mlaE 1013494..1014273 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QBJ73_RS04980 (QBJ73_04985) - 1014270..1015088 (-) 819 WP_004691369.1 ABC transporter ATP-binding protein -
  QBJ73_RS04985 (QBJ73_04990) - 1015489..1017411 (-) 1923 WP_058951632.1 DEAD/DEAH box helicase -
  QBJ73_RS04990 (QBJ73_04995) - 1018162..1018992 (-) 831 WP_004691373.1 inositol monophosphatase family protein -
  QBJ73_RS04995 (QBJ73_05000) dxs 1019109..1021010 (-) 1902 WP_010327616.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24923.14 Da        Isoelectric Point: 9.1966

>NTDB_id=814159 QBJ73_RS04940 WP_010327610.1 1008969..1009616(+) (comF) [Acinetobacter johnsonii strain AYTCM]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGHYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDKIHQQ
FKIDSQQRQYVKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=814159 QBJ73_RS04940 WP_010327610.1 1008969..1009616(+) (comF) [Acinetobacter johnsonii strain AYTCM]
ATGCCTATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTACATTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCGGGACATTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATACGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCGAAAGTGCAAGCAATTGTTCCTATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTAGAACGCTTAGATAAAATTCATCAACAG
TTTAAAATCGATTCACAGCAACGCCAGTACGTAAAACTCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCAGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1J305

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.45

98.14

0.544
  comF Acinetobacter baumannii strain A118

58.247

90.233

0.526