Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   QBL01_RS10455 Genome accession   NZ_CP121769
Coordinates   2110750..2111331 (+) Length   193 a.a.
NCBI ID   WP_021110392.1    Uniprot ID   A0A084ELH5
Organism   Glaesserella parasuis strain Z44     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105750..2116331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS10415 (QBL01_10415) gltX 2106308..2107747 (-) 1440 WP_160433192.1 glutamate--tRNA ligase -
  QBL01_RS10440 (QBL01_10440) - 2108586..2108756 (+) 171 WP_236929974.1 hypothetical protein -
  QBL01_RS10445 (QBL01_10445) - 2108929..2109237 (+) 309 WP_021117805.1 helix-turn-helix domain-containing protein -
  QBL01_RS10450 (QBL01_10450) - 2109438..2110598 (+) 1161 WP_010786053.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  QBL01_RS10455 (QBL01_10455) pilF 2110750..2111331 (+) 582 WP_021110392.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  QBL01_RS10460 (QBL01_10460) - 2111392..2112327 (+) 936 WP_021112016.1 KpsF/GutQ family sugar-phosphate isomerase -
  QBL01_RS10465 (QBL01_10465) greB 2112327..2112815 (+) 489 WP_005710400.1 transcription elongation factor GreB -
  QBL01_RS10485 (QBL01_10485) - 2113341..2114639 (+) 1299 WP_021112015.1 FAD-binding oxidoreductase -
  QBL01_RS10490 (QBL01_10490) - 2114724..2115257 (-) 534 WP_010786060.1 TIGR00645 family protein -
  QBL01_RS10495 (QBL01_10495) - 2115346..2115984 (-) 639 WP_021112014.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22339.24 Da        Isoelectric Point: 8.0872

>NTDB_id=814126 QBL01_RS10455 WP_021110392.1 2110750..2111331(+) (pilF) [Glaesserella parasuis strain Z44]
MTFAKFFRNLTACSVALWLVACANQTTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=814126 QBL01_RS10455 WP_021110392.1 2110750..2111331(+) (pilF) [Glaesserella parasuis strain Z44]
ATGACCTTTGCAAAATTTTTCCGTAATTTGACCGCTTGTAGCGTGGCATTATGGCTTGTTGCTTGTGCGAACCAAACTAC
TCAGGTGGATTTTAACCGCTCGGAAGCCGTCAAAGCTCGCATTAATTTGGCCCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAAAACATTGACAAAGCGCTTGAACACGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTGAATAACTACGGTACCTTTCTGTGCAAACAAAAACAGTTCGACAAAGCCTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGAAGCCTATTATAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(74-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084ELH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

99.482

100

0.995
  pilF/pilF2 Haemophilus influenzae Rd KW20

44.693

92.746

0.415