Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RW107_RS21380 Genome accession   NZ_CP136257
Coordinates   4145848..4146642 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain A9     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4140848..4151642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS21355 (RW107_21355) rocD 4141422..4142627 (-) 1206 WP_047183487.1 ornithine aminotransferase -
  RW107_RS21360 (RW107_21360) rocR 4142868..4144253 (+) 1386 WP_041850282.1 arginine utilization regulatory protein RocR -
  RW107_RS21365 (RW107_21365) - 4144235..4144396 (-) 162 Protein_4165 ATP-binding protein -
  RW107_RS21370 (RW107_21370) - 4144415..4144544 (-) 130 Protein_4166 hypothetical protein -
  RW107_RS21375 (RW107_21375) htrA 4144564..4145766 (-) 1203 WP_041850281.1 serine protease HtrC Regulator
  RW107_RS21380 (RW107_21380) vicX 4145848..4146642 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  RW107_RS21385 (RW107_21385) walI 4146664..4147506 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  RW107_RS21390 (RW107_21390) walH 4147493..4148860 (-) 1368 WP_041850604.1 WalRK two-component regulatory system regulator WalH -
  RW107_RS21395 (RW107_21395) walK 4148850..4150685 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  RW107_RS21400 (RW107_21400) walR 4150693..4151400 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=814100 RW107_RS21380 WP_003226939.1 4145848..4146642(-) (vicX) [Bacillus subtilis strain A9]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=814100 RW107_RS21380 WP_003226939.1 4145848..4146642(-) (vicX) [Bacillus subtilis strain A9]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53