Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QBK97_RS09090 Genome accession   NZ_CP121768
Coordinates   1857733..1858074 (+) Length   113 a.a.
NCBI ID   WP_021112680.1    Uniprot ID   A0A1T0AD78
Organism   Glaesserella parasuis strain d76     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852733..1863074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS09070 (QBK97_09070) - 1854008..1854595 (-) 588 WP_035494230.1 NAD(P)H-dependent oxidoreductase -
  QBK97_RS09075 (QBK97_09075) waaF 1854691..1855743 (-) 1053 WP_160413767.1 lipopolysaccharide heptosyltransferase II -
  QBK97_RS09080 (QBK97_09080) - 1855752..1856150 (-) 399 WP_035494232.1 MliC family protein -
  QBK97_RS09085 (QBK97_09085) - 1856210..1857475 (-) 1266 WP_075630514.1 LysM-like peptidoglycan-binding domain-containing protein -
  QBK97_RS09090 (QBK97_09090) comEA/comE1 1857733..1858074 (+) 342 WP_021112680.1 helix-hairpin-helix domain-containing protein Machinery gene
  QBK97_RS09100 (QBK97_09100) epmA 1859077..1860057 (+) 981 WP_035495957.1 elongation factor P--(R)-beta-lysine ligase -
  QBK97_RS09105 (QBK97_09105) - 1860111..1860389 (+) 279 WP_005714674.1 DUF1778 domain-containing protein -
  QBK97_RS09110 (QBK97_09110) - 1860390..1860887 (+) 498 WP_021112650.1 GNAT family N-acetyltransferase -
  QBK97_RS09115 (QBK97_09115) - 1860901..1861683 (+) 783 WP_016527622.1 YchF/TatD family DNA exonuclease -
  QBK97_RS09120 (QBK97_09120) - 1861723..1862250 (+) 528 WP_043895844.1 DUF1523 family protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12447.29 Da        Isoelectric Point: 9.8973

>NTDB_id=814091 QBK97_RS09090 WP_021112680.1 1857733..1858074(+) (comEA/comE1) [Glaesserella parasuis strain d76]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=814091 QBK97_RS09090 WP_021112680.1 1857733..1858074(+) (comEA/comE1) [Glaesserella parasuis strain d76]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

99.115

100

0.991
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602