Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   QBK97_RS03255 Genome accession   NZ_CP121768
Coordinates   632963..633349 (+) Length   128 a.a.
NCBI ID   WP_010785954.1    Uniprot ID   -
Organism   Glaesserella parasuis strain d76     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627963..638349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS03235 (QBK97_03235) - 628553..631108 (-) 2556 WP_160429878.1 penicillin-binding protein 1A -
  QBK97_RS03240 (QBK97_03240) comA 631262..631939 (+) 678 WP_021116595.1 hypothetical protein Machinery gene
  QBK97_RS03245 (QBK97_03245) comB 631915..632436 (+) 522 WP_010785956.1 hypothetical protein Machinery gene
  QBK97_RS03250 (QBK97_03250) comC 632433..632963 (+) 531 WP_021115650.1 hypothetical protein Machinery gene
  QBK97_RS03255 (QBK97_03255) comD 632963..633349 (+) 387 WP_010785954.1 pilus assembly protein PilP Machinery gene
  QBK97_RS03260 (QBK97_03260) comE 633359..634621 (+) 1263 WP_279368283.1 type IV pilus secretin PilQ Machinery gene
  QBK97_RS03265 (QBK97_03265) nusB 634700..635113 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  QBK97_RS03270 (QBK97_03270) thiL 635122..636090 (+) 969 WP_160576541.1 thiamine-phosphate kinase -
  QBK97_RS03275 (QBK97_03275) - 636093..636563 (+) 471 WP_160576538.1 phosphatidylglycerophosphatase A -
  QBK97_RS03280 (QBK97_03280) - 636565..637194 (+) 630 WP_160576535.1 LysE family transporter -
  QBK97_RS03285 (QBK97_03285) trxA 637491..637805 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 15034.18 Da        Isoelectric Point: 5.1643

>NTDB_id=814077 QBK97_RS03255 WP_010785954.1 632963..633349(+) (comD) [Glaesserella parasuis strain d76]
MRLCFFYFVFLSAVTMADPFYAKENTQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDK
KQLIDLYPNDYLSHSFIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=814077 QBK97_RS03255 WP_010785954.1 632963..633349(+) (comD) [Glaesserella parasuis strain d76]
ATGCGATTATGCTTTTTCTATTTTGTCTTTCTAAGTGCTGTTACTATGGCAGATCCTTTTTATGCCAAGGAAAATACCCA
AGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTGTACGCCAACAGAGAAGGTGAACGAAATTCACCTCA
CCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCGACGATAAAATTCGAGCGATTTTTATAGATGATAAA
AAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCCTTTATTCAAATTAAAGAGATTGATTTTAAATCGGT
TAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAAATTGTTTACTTCAAAATTTTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(13-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

92.035

88.281

0.812