Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RW107_RS17515 Genome accession   NZ_CP136257
Coordinates   3367322..3367957 (-) Length   211 a.a.
NCBI ID   WP_029318425.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3362322..3372957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS17495 (RW107_17495) yvzF 3363379..3363564 (-) 186 WP_003228521.1 YvzF family protein -
  RW107_RS17500 (RW107_17500) gerAA 3363682..3365130 (+) 1449 WP_087614703.1 spore germination receptor protein GerAA -
  RW107_RS17505 (RW107_17505) gerAB 3365099..3366196 (+) 1098 WP_128441835.1 spore germination receptor protein GerAB -
  RW107_RS17510 (RW107_17510) gerAC 3366193..3367314 (+) 1122 WP_003243203.1 spore germination receptor protein GerAC -
  RW107_RS17515 (RW107_17515) vraR 3367322..3367957 (-) 636 WP_029318425.1 two-component system response regulator LiaR Regulator
  RW107_RS17520 (RW107_17520) liaS 3367935..3369017 (-) 1083 WP_041333103.1 two-component system sensor histidine kinase LiaS -
  RW107_RS17525 (RW107_17525) liaF 3369014..3369739 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  RW107_RS17530 (RW107_17530) liaG 3369773..3370645 (-) 873 WP_041850550.1 DUF4097 domain-containing protein -
  RW107_RS17535 (RW107_17535) liaH 3370746..3371423 (-) 678 WP_003228506.1 stress responsive protein LiaH -
  RW107_RS17540 (RW107_17540) liaI 3371450..3371830 (-) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23123.77 Da        Isoelectric Point: 5.0163

>NTDB_id=814077 RW107_RS17515 WP_029318425.1 3367322..3367957(-) (vraR) [Bacillus subtilis strain A9]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=814077 RW107_RS17515 WP_029318425.1 3367322..3367957(-) (vraR) [Bacillus subtilis strain A9]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTAGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACAAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTAGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACAGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403