Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RW107_RS08425 Genome accession   NZ_CP136257
Coordinates   1618762..1619787 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain A9     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613762..1624787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS08390 (RW107_08390) ylbE 1614062..1614301 (+) 240 WP_003232231.1 YlbE-like family protein -
  RW107_RS08395 (RW107_08395) ylbF 1614417..1614866 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  RW107_RS08400 (RW107_08400) ylbG 1614921..1615193 (+) 273 WP_015715839.1 YlbG family protein -
  RW107_RS08405 (RW107_08405) rsmD 1615516..1616070 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RW107_RS08410 (RW107_08410) coaD 1616075..1616560 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  RW107_RS08415 (RW107_08415) spoVV 1616571..1617797 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  RW107_RS08420 (RW107_08420) ylbK 1617978..1618760 (+) 783 WP_003232221.1 patatin family protein -
  RW107_RS08425 (RW107_08425) sepM 1618762..1619787 (+) 1026 WP_003245451.1 protease DdcP Regulator
  RW107_RS08430 (RW107_08430) tmcAL 1619804..1621051 (-) 1248 WP_128441609.1 nucleotidyltransferase -
  RW107_RS08435 (RW107_08435) - 1621048..1621233 (-) 186 WP_003232215.1 hypothetical protein -
  RW107_RS08440 (RW107_08440) ylbN 1621261..1621779 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  RW107_RS08445 (RW107_08445) rpmF 1621801..1621980 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  RW107_RS08450 (RW107_08450) gerR 1622125..1622706 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  RW107_RS08455 (RW107_08455) ylbP 1622763..1623245 (-) 483 WP_014476736.1 N-acetyltransferase -
  RW107_RS08460 (RW107_08460) panEA 1623405..1624301 (+) 897 WP_128441611.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=814014 RW107_RS08425 WP_003245451.1 1618762..1619787(+) (sepM) [Bacillus subtilis strain A9]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=814014 RW107_RS08425 WP_003245451.1 1618762..1619787(+) (sepM) [Bacillus subtilis strain A9]
TTGCTACGAAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCTGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402