Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   R8474_RS07700 Genome accession   NZ_AP026914
Coordinates   1518699..1519748 (-) Length   349 a.a.
NCBI ID   WP_317641679.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1513699..1524748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS07670 (PC0003_15220) - 1513875..1515236 (+) 1362 WP_317641666.1 bacteriocin secretion accessory protein -
  R8474_RS07675 (PC0003_15230) blpC 1515293..1515421 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R8474_RS07680 (PC0003_15240) - 1515492..1516832 (-) 1341 WP_001017646.1 sensor histidine kinase -
  R8474_RS07685 (PC0003_15250) comE/blpR 1516846..1517583 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R8474_RS07690 (PC0003_15260) - 1517588..1517926 (-) 339 WP_317641671.1 LytTR family DNA-binding domain-containing protein -
  R8474_RS07695 (PC0003_15270) - 1518202..1518531 (+) 330 WP_000132567.1 hypothetical protein -
  R8474_RS07700 (PC0003_15280) pptB 1518699..1519748 (-) 1050 WP_317641679.1 ABC transporter permease Regulator
  R8474_RS07705 (PC0003_15290) pptA 1519745..1520476 (-) 732 WP_317641681.1 ABC transporter ATP-binding protein Regulator
  R8474_RS07710 (PC0003_15300) - 1520544..1520954 (+) 411 WP_001278301.1 HIT family protein -
  R8474_RS07715 (PC0003_15310) - 1520964..1521251 (+) 288 WP_268217887.1 hypothetical protein -
  R8474_RS07720 (PC0003_15320) - 1521413..1521697 (+) 285 WP_050150649.1 hypothetical protein -
  R8474_RS07725 (PC0003_15330) dnaJ 1522031..1523167 (-) 1137 WP_317641686.1 molecular chaperone DnaJ -
  R8474_RS07730 (PC0003_15340) - 1523440..1523796 (-) 357 WP_000114422.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40496.49 Da        Isoelectric Point: 9.8049

>NTDB_id=81385 R8474_RS07700 WP_317641679.1 1518699..1519748(-) (pptB) [Streptococcus pneumoniae strain PZ900700003]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQDFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLQVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=81385 R8474_RS07700 WP_317641679.1 1518699..1519748(-) (pptB) [Streptococcus pneumoniae strain PZ900700003]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCTTGCTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACCTCTGTTTTACTCTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTTCAAGAA
AAACTAGCCCTTCTAGCCTTACTGGGAGCTGGTTTGGTTTTACAAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467