Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   QBE57_RS08400 Genome accession   NZ_CP121670
Coordinates   1712772..1713038 (-) Length   88 a.a.
NCBI ID   WP_014635810.1    Uniprot ID   A0A2K1SXG9
Organism   Streptococcus suis strain HBXY-SL     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1707772..1718038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS08360 rpsC 1708059..1708712 (-) 654 WP_002936661.1 30S ribosomal protein S3 -
  QBE57_RS08365 rplV 1708725..1709069 (-) 345 WP_002936662.1 50S ribosomal protein L22 -
  QBE57_RS08370 rpsS 1709087..1709368 (-) 282 WP_000533766.1 30S ribosomal protein S19 -
  QBE57_RS08375 rplB 1709619..1710452 (-) 834 WP_002936663.1 50S ribosomal protein L2 -
  QBE57_RS08380 - 1710470..1710769 (-) 300 WP_004195491.1 50S ribosomal protein L23 -
  QBE57_RS08385 rplD 1710769..1711392 (-) 624 WP_004195490.1 50S ribosomal protein L4 -
  QBE57_RS08390 rplC 1711417..1712043 (-) 627 WP_011921686.1 50S ribosomal protein L3 -
  QBE57_RS08395 rpsJ 1712140..1712448 (-) 309 WP_011922546.1 30S ribosomal protein S10 -
  QBE57_RS08400 comX/sigX 1712772..1713038 (-) 267 WP_014635810.1 hypothetical protein Regulator
  QBE57_RS08405 - 1713111..1713689 (-) 579 WP_012774895.1 nucleotidyltransferase family protein -
  QBE57_RS08410 - 1713897..1714217 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  QBE57_RS08415 ruvX 1714229..1714648 (-) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  QBE57_RS08420 - 1714648..1714914 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  QBE57_RS08425 spx 1715014..1715412 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  QBE57_RS08430 recA 1715648..1716799 (-) 1152 WP_011922545.1 recombinase RecA Machinery gene
  QBE57_RS08435 cinA 1716851..1718032 (-) 1182 WP_012774894.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10670.50 Da        Isoelectric Point: 9.1949

>NTDB_id=813800 QBE57_RS08400 WP_014635810.1 1712772..1713038(-) (comX/sigX) [Streptococcus suis strain HBXY-SL]
MEFETVCLKVRNLGRLYCYFKVKFRTHIEAIIRKQESQKCKFDRLLHEDIHSLIQSPSLGNDELLMLWGLLRDYRKNLIN
DRLENMKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=813800 QBE57_RS08400 WP_014635810.1 1712772..1713038(-) (comX/sigX) [Streptococcus suis strain HBXY-SL]
ATGGAATTTGAAACGGTTTGTTTGAAGGTTAGAAACTTAGGTAGGCTATATTGCTACTTCAAAGTTAAATTTAGAACCCA
TATCGAGGCTATAATTCGTAAACAGGAAAGTCAAAAATGTAAATTTGATCGTCTCCTCCATGAAGATATTCATAGTTTGA
TTCAATCACCGAGCTTGGGTAATGATGAGTTGCTGATGTTATGGGGTCTCCTGAGAGATTATCGAAAAAATTTAATCAAT
GACCGACTTGAAAATATGAAAAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K1SXG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

72.603

82.955

0.602
  comX/sigX Streptococcus suis isolate S10

71.233

82.955

0.591
  comX/sigX Streptococcus suis P1/7

71.233

82.955

0.591