Detailed information NTG0813780

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QBE57_RS04200
• Genome accession: NZ_CP121670
• Coordinates: 842954..844180 (-)
• Length: 408 a.a.
• NCBI ID: WP_002934974.1
• Uniprot ID: G7SE29
• Organism: Streptococcus suis strain HBXY-SL
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 837954..849180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBE57_RS04175	-	838755..838937 (+)	183	WP_002934978.1	4-oxalocrotonate tautomerase	-
QBE57_RS04180	lepA	838987..840819 (-)	1833	WP_002943192.1	translation elongation factor 4	-
QBE57_RS04185	-	841101..841772 (-)	672	WP_011922364.1	HIRAN domain-containing protein	-
QBE57_RS04190	ndk	841876..842289 (-)	414	WP_012028095.1	nucleoside-diphosphate kinase	-
QBE57_RS04195	yihA	842312..842899 (-)	588	WP_014638915.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
QBE57_RS04200	clpX	842954..844180 (-)	1227	WP_002934974.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
QBE57_RS04205	-	844202..844375 (-)	174	WP_002934972.1	hypothetical protein	-
QBE57_RS04210	-	844378..844890 (-)	513	WP_024378658.1	dihydrofolate reductase	-
QBE57_RS04215	-	845245..846084 (-)	840	WP_044992873.1	thymidylate synthase	-
QBE57_RS04220	-	846449..846727 (-)	279	WP_024381822.1	hypothetical protein	-
QBE57_RS04225	-	846853..847812 (-)	960	WP_171935682.1	ROK family glucokinase	-
QBE57_RS04230	-	847904..848239 (-)	336	WP_024410081.1	hypothetical protein	-

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 45318.84 Da
• Isoelectric Point: 4.6382

>NTDB_id=813780 QBE57_RS04200 WP_002934974.1 842954..844180(-) (clpX) [Streptococcus suis strain HBXY-SL]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide

• Length: 1227 bp

>NTDB_id=813780 QBE57_RS04200 WP_002934974.1 842954..844180(-) (clpX) [Streptococcus suis strain HBXY-SL]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCCGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAGCAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAAACTGGTGCTCGTGGACTTCGCTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTGGAAACTGCATAA

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-47)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-304)

3D structure

• AlphaFold DB: G7SE29

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	83.13	100	0.833
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.209	98.529	0.574