Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QBE57_RS02250 Genome accession   NZ_CP121670
Coordinates   446742..447545 (+) Length   267 a.a.
NCBI ID   WP_024410918.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 441742..452545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS02225 - 442171..442869 (-) 699 WP_012028333.1 amino acid ABC transporter permease -
  QBE57_RS02230 - 442884..443723 (-) 840 WP_012027305.1 transporter substrate-binding domain-containing protein -
  QBE57_RS02235 - 443734..444495 (-) 762 WP_012027304.1 amino acid ABC transporter ATP-binding protein -
  QBE57_RS02240 micA 444689..445393 (+) 705 WP_004298854.1 response regulator YycF Regulator
  QBE57_RS02245 micB 445386..446735 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QBE57_RS02250 vicX 446742..447545 (+) 804 WP_024410918.1 MBL fold metallo-hydrolase Regulator
  QBE57_RS02255 vga(F) 447800..449185 (+) 1386 WP_171935704.1 ABC-F type ribosomal protection protein Vga(F) -
  QBE57_RS02260 pbp2b 449300..451345 (+) 2046 WP_216655091.1 penicillin-binding protein PBP2B -
  QBE57_RS02265 recR 451354..451950 (+) 597 WP_014637682.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29677.77 Da        Isoelectric Point: 5.7755

>NTDB_id=813771 QBE57_RS02250 WP_024410918.1 446742..447545(+) (vicX) [Streptococcus suis strain HBXY-SL]
MIGKGFNYSILASGSSGNCFFLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADFGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=813771 QBE57_RS02250 WP_024410918.1 446742..447545(+) (vicX) [Streptococcus suis strain HBXY-SL]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTTCCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAGTTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTA
GCTCAGGCTGATTTTGGAGTTGGAGTGGATTTTCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764