Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QBE57_RS00440 Genome accession   NZ_CP121670
Coordinates   94149..94838 (+) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 89149..99838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS00415 - 89479..90822 (+) 1344 WP_105119179.1 DEAD/DEAH box helicase -
  QBE57_RS00420 - 90840..91064 (+) 225 WP_002936682.1 DUF4059 family protein -
  QBE57_RS00425 trxB 91077..91994 (+) 918 WP_105119180.1 thioredoxin-disulfide reductase -
  QBE57_RS00430 - 92004..92543 (+) 540 WP_167786789.1 YceD family protein -
  QBE57_RS00435 gndA 92640..94067 (+) 1428 WP_105119182.1 NADP-dependent phosphogluconate dehydrogenase -
  QBE57_RS00440 covR 94149..94838 (+) 690 WP_012027645.1 response regulator transcription factor Regulator
  QBE57_RS00445 - 94928..96058 (+) 1131 WP_012027644.1 AI-2E family transporter -
  QBE57_RS00450 nrdR 96130..96606 (+) 477 Protein_89 transcriptional regulator NrdR -
  QBE57_RS00455 dnaI 97758..98657 (+) 900 WP_012027642.1 primosomal protein DnaI -
  QBE57_RS00460 - 98654..99366 (+) 713 Protein_91 NADPH-dependent oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=813764 QBE57_RS00440 WP_012027645.1 94149..94838(+) (covR) [Streptococcus suis strain HBXY-SL]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=813764 QBE57_RS00440 WP_012027645.1 94149..94838(+) (covR) [Streptococcus suis strain HBXY-SL]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAAAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTGTTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
TAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGACTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGCTGGCAACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432