Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | KI219_RS04905 | Genome accession | NZ_AP023089 |
| Coordinates | 1018706..1019041 (+) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain RSC-2 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1013706..1024041
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI219_RS04885 | gcvT | 1014138..1015231 (-) | 1094 | Protein_983 | glycine cleavage system aminomethyltransferase GcvT | - |
| KI219_RS04890 (RSC2_01038) | - | 1015825..1017504 (+) | 1680 | WP_020452163.1 | SNF2-related protein | - |
| KI219_RS04895 (RSC2_01039) | - | 1017511..1018305 (+) | 795 | WP_020452164.1 | YqhG family protein | - |
| KI219_RS04900 (RSC2_01040) | sinI | 1018496..1018672 (+) | 177 | WP_023855184.1 | anti-repressor SinI family protein | Regulator |
| KI219_RS04905 (RSC2_01041) | sinR | 1018706..1019041 (+) | 336 | WP_023855185.1 | helix-turn-helix domain-containing protein | Regulator |
| KI219_RS04910 (RSC2_01042) | - | 1019146..1019940 (-) | 795 | WP_020452167.1 | TasA family protein | - |
| KI219_RS04915 (RSC2_01043) | - | 1020013..1020597 (-) | 585 | WP_020452168.1 | signal peptidase I | - |
| KI219_RS21600 (RSC2_01044) | - | 1020594..1020824 (-) | 231 | WP_244834609.1 | hypothetical protein | - |
| KI219_RS21605 (RSC2_01045) | tapA | 1020893..1021321 (-) | 429 | WP_244834611.1 | amyloid fiber anchoring/assembly protein TapA | - |
| KI219_RS04925 (RSC2_01046) | - | 1021599..1021919 (+) | 321 | WP_023855188.1 | YqzG/YhdC family protein | - |
| KI219_RS04930 (RSC2_01047) | - | 1021949..1022131 (-) | 183 | WP_020452171.1 | YqzE family protein | - |
| KI219_RS04935 (RSC2_01048) | comGG | 1022220..1022585 (-) | 366 | WP_025811163.1 | competence type IV pilus minor pilin ComGG | - |
| KI219_RS04940 (RSC2_01049) | comGF | 1022597..1023085 (-) | 489 | WP_224067282.1 | competence type IV pilus minor pilin ComGF | - |
| KI219_RS04945 (RSC2_01050) | comGE | 1022994..1023341 (-) | 348 | WP_023855191.1 | competence type IV pilus minor pilin ComGE | - |
| KI219_RS04950 (RSC2_01051) | comGD | 1023325..1023762 (-) | 438 | WP_039072845.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=81340 KI219_RS04905 WP_023855185.1 1018706..1019041(+) (sinR) [Bacillus paralicheniformis strain RSC-2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=81340 KI219_RS04905 WP_023855185.1 1018706..1019041(+) (sinR) [Bacillus paralicheniformis strain RSC-2]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |