Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   KI220_RS21345 Genome accession   NZ_AP023088
Coordinates   4278429..4280741 (-) Length   770 a.a.
NCBI ID   WP_095323674.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 4273429..4285741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS21305 (RSC1_04316) - 4273895..4274326 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  KI220_RS21310 (RSC1_04317) - 4274326..4274667 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  KI220_RS21315 (RSC1_04318) - 4274660..4276137 (+) 1478 Protein_4190 Na+/H+ antiporter subunit D -
  KI220_RS21320 (RSC1_04320) - 4276143..4276619 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  KI220_RS21325 (RSC1_04321) - 4276619..4276903 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  KI220_RS21330 (RSC1_04322) mnhG 4276887..4277261 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  KI220_RS21335 (RSC1_04323) - 4277298..4277687 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  KI220_RS21340 (RSC1_04324) comA 4277704..4278342 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  KI220_RS21345 (RSC1_04325) comP 4278429..4280741 (-) 2313 WP_095323674.1 ATP-binding protein Regulator
  KI220_RS21350 (RSC1_04326) comX 4280753..4280926 (-) 174 WP_080131484.1 competence pheromone ComX -
  KI220_RS21355 (RSC1_04327) - 4280930..4281811 (-) 882 WP_095292403.1 polyprenyl synthetase family protein -
  KI220_RS21360 (RSC1_04328) degQ 4281998..4282138 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  KI220_RS21365 - 4282750..4282971 (+) 222 WP_229029875.1 hypothetical protein -
  KI220_RS21370 (RSC1_04329) - 4283014..4284234 (-) 1221 WP_020452793.1 HDOD domain-containing protein -

Sequence


Protein


Download         Length: 770 a.a.        Molecular weight: 88451.65 Da        Isoelectric Point: 6.7193

>NTDB_id=81329 KI220_RS21345 WP_095323674.1 4278429..4280741(-) (comP) [Bacillus paralicheniformis strain RSC-1]
MKSSLKFISILLVLLSFVYSIYICYLCFNNAFEGAKLKYNSHNQLVVIEVEEHSLAEYAGLKKGDILLEIDGKSITKKRE
PAEDILSWAYSVTVKRDAEVVDINTKETFLGYDIFFVFLIPVTFYLLCLFCIFFILNSSKSKKLFSSTFLLIAFLLNVSI
AYLSAGGVSRGDVFSRYVNLLTFLSVPVSYLHFVYQYFKEKGKQFFNNKVFLLYLLPVINIIIEYFLGEDKLSIEVLSTI
NLSSFFIGVTMVFIVILYGLNKYKFSEQAYFLKILMLTNFIAIIPFVGFYVLPTLVLGDYIFPSVFVAPFLLLIPFSLVY
QFMANKIYNIEFILGRLRYYGLLAIIPTVIVVCIVTFTQYQTGGYNTVRLAIYIYLVMLGVFYLKEMLDFRFRLKRFSEK
FNYQDSIFKFTQTIRTFTSLNQVLLELKQTILDVLTVSQAHVLGVKSDGTISLLEGDTEEYPWIPYEQEVTKVITDIGKI
VEVDRGFLIKIGERGGTSYVMLCLSVLNTPRLTRDEISWLETLAFYTSVSLENVLKIGELMEHLEHVKKEGPNPAWLNKL
MFAIEEKQRSDLARDLHDSVLQDMISLKHQSEMFLADFEKDKVCTNQIRQRLINMNEQMSTVIQTTRETCQELRPQLLYD
LGLVKALSKLAAQHQESSSIDKIRLNTERFSKVLDLDTQLNLYRIVQELLSNAVKHSKANEVLIMLVCIKEKVVLHYEDD
GIGFDPDKLYQNSASMGLSGIRERVRALNGSLDIQTAEGKGFRVAIEMEL

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=81329 KI220_RS21345 WP_095323674.1 4278429..4280741(-) (comP) [Bacillus paralicheniformis strain RSC-1]
TTGAAATCTTCATTAAAGTTTATTTCAATTTTGCTGGTTCTTTTAAGTTTTGTTTATAGTATTTATATTTGTTATCTCTG
TTTTAATAATGCATTTGAAGGTGCTAAATTAAAGTATAATTCGCATAATCAATTAGTCGTTATAGAAGTAGAAGAGCACT
CTCTTGCGGAATATGCCGGGCTTAAAAAAGGTGATATTCTTCTCGAGATTGATGGTAAATCTATAACCAAAAAGAGAGAG
CCAGCAGAAGACATTCTTTCGTGGGCTTACTCAGTCACGGTAAAACGGGATGCCGAAGTGGTGGATATCAATACCAAAGA
GACATTTCTTGGATATGATATATTTTTTGTGTTTTTGATCCCTGTAACTTTTTATTTATTATGCCTATTTTGTATTTTTT
TCATTTTAAATTCAAGTAAATCAAAGAAACTGTTTTCTTCAACTTTTTTATTGATTGCTTTTTTATTAAACGTTTCTATC
GCATATTTAAGTGCAGGTGGCGTATCTAGGGGTGATGTGTTTAGTAGATACGTAAATTTGCTGACATTTTTATCAGTGCC
CGTAAGTTACTTGCATTTTGTTTATCAGTATTTTAAAGAAAAAGGGAAACAATTTTTCAATAATAAAGTGTTTTTACTAT
ATCTCTTGCCGGTAATTAATATTATTATTGAATATTTTTTAGGTGAGGATAAACTATCAATTGAAGTTCTAAGCACCATA
AATTTGTCTTCTTTTTTTATTGGTGTAACCATGGTTTTCATCGTTATTTTATATGGATTAAATAAATATAAGTTTTCCGA
ACAGGCTTATTTTTTAAAGATATTGATGTTGACCAATTTTATAGCAATAATACCTTTTGTGGGCTTTTATGTTCTGCCAA
CTTTAGTTTTAGGAGATTACATATTTCCATCTGTTTTTGTTGCACCATTTCTTTTATTAATTCCATTTTCTCTAGTCTAT
CAATTTATGGCAAATAAAATATACAATATTGAGTTTATTCTAGGCAGACTAAGATATTATGGATTATTGGCGATTATACC
AACAGTAATCGTTGTATGTATAGTAACGTTTACACAATATCAAACAGGTGGCTACAATACAGTTAGACTCGCAATTTATA
TTTATCTTGTCATGCTTGGTGTATTTTATTTAAAAGAAATGCTAGACTTCCGTTTTCGCCTAAAGCGTTTTTCAGAGAAG
TTTAACTATCAAGACAGTATTTTTAAGTTTACTCAAACGATCCGGACATTTACCTCTTTGAACCAAGTACTGTTAGAATT
GAAGCAAACGATTCTGGATGTTCTAACCGTGAGTCAAGCGCATGTTTTAGGAGTTAAAAGCGACGGGACAATATCTTTGC
TCGAGGGAGATACCGAAGAATATCCGTGGATCCCGTACGAACAAGAAGTAACCAAGGTCATCACCGACATCGGCAAAATC
GTCGAAGTCGACCGCGGATTTTTGATTAAGATCGGTGAACGGGGCGGGACTTCTTATGTCATGCTGTGTTTGTCGGTTTT
AAATACGCCTAGGCTGACGCGCGATGAGATTTCGTGGCTTGAGACGCTGGCGTTTTATACGAGTGTTTCCCTGGAAAACG
TCTTGAAAATCGGCGAGCTGATGGAGCATCTGGAACATGTGAAAAAAGAAGGGCCGAATCCGGCGTGGCTGAATAAATTG
ATGTTTGCGATTGAAGAGAAGCAGAGATCTGATTTGGCCCGTGATCTTCATGATTCTGTGCTGCAGGACATGATTTCCTT
GAAGCATCAAAGCGAGATGTTTCTGGCTGATTTTGAAAAAGATAAAGTCTGTACGAATCAAATCAGGCAAAGGCTCATCA
ATATGAATGAGCAAATGTCCACCGTCATCCAGACGACAAGGGAAACGTGTCAGGAGCTGAGGCCGCAGCTGTTGTACGAT
CTCGGACTGGTCAAAGCCCTTTCGAAACTGGCGGCACAGCATCAGGAGTCCTCATCGATCGATAAGATCCGCCTCAATAC
GGAAAGGTTCTCAAAGGTGCTCGACCTGGACACGCAGCTGAATTTGTACAGAATTGTGCAGGAGCTTTTAAGCAATGCGG
TTAAACACTCGAAAGCTAATGAGGTTTTGATTATGCTTGTCTGCATAAAAGAAAAAGTTGTTCTTCATTATGAAGATGAC
GGCATCGGTTTTGATCCGGACAAGCTTTATCAAAACAGCGCAAGCATGGGGCTGTCGGGCATTCGCGAGCGAGTCCGCGC
GCTGAACGGCAGTCTGGATATACAGACAGCAGAAGGGAAAGGCTTCAGGGTCGCCATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

52.679

100

0.536


Multiple sequence alignment