Detailed information NTG0081329

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R8474_RS01270
• Genome accession: NZ_AP026914
• Coordinates: 231420..232418 (+)
• Length: 332 a.a.
• NCBI ID: WP_001810210.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 226420..237418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8474_RS01250 (PC0003_02400)	leuS	226563..229064 (+)	2502	WP_000011789.1	leucine--tRNA ligase	-
R8474_RS01255 (PC0003_02410)	-	229258..229953 (+)	696	WP_001144913.1	GNAT family N-acetyltransferase	-
R8474_RS01260 (PC0003_02420)	-	229965..230381 (+)	417	WP_000628392.1	GNAT family N-acetyltransferase	-
R8474_RS01265	-	231195..231286 (-)	92	Protein_246	type I toxin-antitoxin system Fst family toxin	-
R8474_RS01270 (PC0003_02430)	ruvB	231420..232418 (+)	999	WP_001810210.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R8474_RS01275 (PC0003_02440)	-	232399..232971 (+)	573	WP_001098897.1	nucleotidyltransferase family protein	-
R8474_RS01280 (PC0003_02450)	-	233202..233960 (+)	759	WP_000466719.1	isoprenyl transferase	-
R8474_RS01285 (PC0003_02460)	-	233969..234772 (+)	804	WP_000189866.1	phosphatidate cytidylyltransferase	-
R8474_RS01290 (PC0003_02470)	eeP	234794..236053 (+)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37258.70 Da
• Isoelectric Point: 4.5053

>NTDB_id=81329 R8474_RS01270 WP_001810210.1 231420..232418(+) (ruvB) [Streptococcus pneumoniae strain PZ900700003]
MGRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=81329 R8474_RS01270 WP_001810210.1 231420..232418(+) (ruvB) [Streptococcus pneumoniae strain PZ900700003]
ATGGGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCAAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCCAATCCGCTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATTGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47