Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KI220_RS21340 Genome accession   NZ_AP023088
Coordinates   4277704..4278342 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain RSC-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4272704..4283342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS21305 (RSC1_04316) - 4273895..4274326 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  KI220_RS21310 (RSC1_04317) - 4274326..4274667 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  KI220_RS21315 (RSC1_04318) - 4274660..4276137 (+) 1478 Protein_4190 Na+/H+ antiporter subunit D -
  KI220_RS21320 (RSC1_04320) - 4276143..4276619 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  KI220_RS21325 (RSC1_04321) - 4276619..4276903 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  KI220_RS21330 (RSC1_04322) mnhG 4276887..4277261 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  KI220_RS21335 (RSC1_04323) - 4277298..4277687 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  KI220_RS21340 (RSC1_04324) comA 4277704..4278342 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  KI220_RS21345 (RSC1_04325) comP 4278429..4280741 (-) 2313 WP_095323674.1 ATP-binding protein Regulator
  KI220_RS21350 (RSC1_04326) comX 4280753..4280926 (-) 174 WP_080131484.1 competence pheromone ComX -
  KI220_RS21355 (RSC1_04327) - 4280930..4281811 (-) 882 WP_095292403.1 polyprenyl synthetase family protein -
  KI220_RS21360 (RSC1_04328) degQ 4281998..4282138 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  KI220_RS21365 - 4282750..4282971 (+) 222 WP_229029875.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=81328 KI220_RS21340 WP_003184849.1 4277704..4278342(-) (comA) [Bacillus paralicheniformis strain RSC-1]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=81328 KI220_RS21340 WP_003184849.1 4277704..4278342(-) (comA) [Bacillus paralicheniformis strain RSC-1]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
GTCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment