Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | KI220_RS17720 | Genome accession | NZ_AP023088 |
| Coordinates | 3587807..3588142 (+) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain RSC-1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3582807..3593142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI220_RS17700 (RSC1_03591) | gcvT | 3583238..3584332 (-) | 1095 | WP_023855182.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| KI220_RS17705 (RSC1_03592) | - | 3584927..3586606 (+) | 1680 | WP_020452163.1 | SNF2-related protein | - |
| KI220_RS17710 (RSC1_03593) | - | 3586613..3587407 (+) | 795 | WP_020452164.1 | YqhG family protein | - |
| KI220_RS17715 (RSC1_03594) | sinI | 3587597..3587773 (+) | 177 | WP_023855184.1 | anti-repressor SinI family protein | Regulator |
| KI220_RS17720 (RSC1_03595) | sinR | 3587807..3588142 (+) | 336 | WP_023855185.1 | helix-turn-helix domain-containing protein | Regulator |
| KI220_RS17725 (RSC1_03596) | - | 3588247..3589041 (-) | 795 | WP_020452167.1 | TasA family protein | - |
| KI220_RS17730 (RSC1_03597) | - | 3589114..3589698 (-) | 585 | WP_020452168.1 | signal peptidase I | - |
| KI220_RS17735 (RSC1_03598) | tapA | 3589695..3590423 (-) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
| KI220_RS17740 (RSC1_03599) | - | 3590701..3591021 (+) | 321 | WP_023855188.1 | YqzG/YhdC family protein | - |
| KI220_RS17745 (RSC1_03600) | - | 3591051..3591233 (-) | 183 | WP_020452171.1 | YqzE family protein | - |
| KI220_RS17750 (RSC1_03601) | comGG | 3591322..3591687 (-) | 366 | WP_025811163.1 | competence type IV pilus minor pilin ComGG | - |
| KI220_RS17755 (RSC1_03602) | comGF | 3591699..3592187 (-) | 489 | WP_224067282.1 | competence type IV pilus minor pilin ComGF | - |
| KI220_RS17760 (RSC1_03603) | comGE | 3592096..3592443 (-) | 348 | WP_023855191.1 | competence type IV pilus minor pilin ComGE | - |
| KI220_RS17765 (RSC1_03604) | comGD | 3592427..3592864 (-) | 438 | WP_039072845.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=81314 KI220_RS17720 WP_023855185.1 3587807..3588142(+) (sinR) [Bacillus paralicheniformis strain RSC-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=81314 KI220_RS17720 WP_023855185.1 3587807..3588142(+) (sinR) [Bacillus paralicheniformis strain RSC-1]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |