Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   KI220_RS14465 Genome accession   NZ_AP023088
Coordinates   2897191..2897667 (+) Length   158 a.a.
NCBI ID   WP_130569497.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2892191..2902667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS14440 (RSC1_02919) - 2893310..2894286 (+) 977 Protein_2830 alpha/beta hydrolase family protein -
  KI220_RS14445 (RSC1_02920) - 2894347..2894574 (+) 228 WP_023857612.1 hypothetical protein -
  KI220_RS14450 (RSC1_02922) - 2895270..2895866 (+) 597 WP_020451565.1 class I SAM-dependent methyltransferase -
  KI220_RS14455 (RSC1_02923) - 2895972..2896454 (+) 483 WP_130569492.1 DUF4944 domain-containing protein -
  KI220_RS14460 (RSC1_02924) - 2896488..2897060 (+) 573 WP_023857608.1 GNAT family N-acetyltransferase -
  KI220_RS14465 (RSC1_02925) rok 2897191..2897667 (+) 477 WP_130569497.1 hypothetical protein Regulator
  KI220_RS14470 (RSC1_02926) - 2897787..2897960 (+) 174 WP_165389276.1 hypothetical protein -
  KI220_RS14475 (RSC1_02927) - 2898313..2898933 (-) 621 WP_026579659.1 hypothetical protein -
  KI220_RS14480 (RSC1_02929) - 2899494..2900078 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  KI220_RS14485 (RSC1_02930) - 2900159..2900491 (+) 333 WP_020451572.1 multidrug efflux SMR transporter -
  KI220_RS14490 (RSC1_02931) - 2900494..2900811 (+) 318 WP_020451573.1 multidrug efflux SMR transporter -
  KI220_RS14495 (RSC1_02932) speG 2900840..2901382 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  KI220_RS14500 (RSC1_02933) - 2901419..2901775 (-) 357 WP_020451575.1 YxeA family protein -
  KI220_RS14505 (RSC1_02934) - 2901955..2902395 (+) 441 WP_039072735.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18313.17 Da        Isoelectric Point: 9.8473

>NTDB_id=81308 KI220_RS14465 WP_130569497.1 2897191..2897667(+) (rok) [Bacillus paralicheniformis strain RSC-1]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDQESDPAINKKSSLIDLASAAAEELKQSQIAVDKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=81308 KI220_RS14465 WP_130569497.1 2897191..2897667(+) (rok) [Bacillus paralicheniformis strain RSC-1]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
GAAAGAACGACAAGACATTTATTCGAAGCTGCGTGAATTGGATCAGGAGAGTGATCCCGCAATTAACAAAAAATCTTCAT
TAATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAGATTGCCGTTGACAAACATCCACCCATCAAAACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGTGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACAACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAACCTGCCCGCGGCCATTATATTTTGCAAAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.857

100

0.494

Multiple sequence alignment