Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KI220_RS13395 Genome accession   NZ_AP023088
Coordinates   2685974..2686876 (+) Length   300 a.a.
NCBI ID   WP_075213242.1    Uniprot ID   A0A7Z0WTY9
Organism   Bacillus paralicheniformis strain RSC-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2680974..2691876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS13375 (RSC1_02684) - 2681626..2683323 (+) 1698 WP_035338774.1 hypothetical protein -
  KI220_RS13380 (RSC1_02685) - 2683320..2683604 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  KI220_RS13385 (RSC1_02686) sucC 2683780..2684940 (+) 1161 WP_020451378.1 ADP-forming succinate--CoA ligase subunit beta -
  KI220_RS13390 (RSC1_02687) sucD 2684959..2685861 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  KI220_RS13395 (RSC1_02688) dprA 2685974..2686876 (+) 903 WP_075213242.1 DNA-processing protein DprA Machinery gene
  KI220_RS13400 (RSC1_02689) topA 2687081..2689156 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  KI220_RS13405 (RSC1_02690) trmFO 2689232..2690536 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KI220_RS13410 (RSC1_02691) xerC 2690603..2691517 (+) 915 WP_020451383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33120.54 Da        Isoelectric Point: 9.9680

>NTDB_id=81304 KI220_RS13395 WP_075213242.1 2685974..2686876(+) (dprA) [Bacillus paralicheniformis strain RSC-1]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKISLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKIIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSCGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=81304 KI220_RS13395 WP_075213242.1 2685974..2686876(+) (dprA) [Bacillus paralicheniformis strain RSC-1]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGATTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAATCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCACAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTGCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z0WTY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

39.535

100

0.397

Multiple sequence alignment