NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	MTS31_RS04540	Genome accession	NZ_CP121563
Coordinates	933621..934481 (-)	Length	286 a.a.
NCBI ID	WP_057078044.1	Uniprot ID	A0A8I1ZA09
Organism	Acinetobacter baumannii strain RAB94
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 928621..939481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTS31_RS04515 (MTS31_04515)	-	929512..930822 (+)	1311	WP_002055139.1	tetratricopeptide repeat protein	-
MTS31_RS04520 (MTS31_04520)	-	930899..931225 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
MTS31_RS04525 (MTS31_04525)	rlmB	931327..932076 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
MTS31_RS04530 (MTS31_04530)	-	932112..933026 (+)	915	WP_000075015.1	DMT family transporter	-
MTS31_RS04535 (MTS31_04535)	coaE	933023..933619 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
MTS31_RS04540 (MTS31_04540)	pilD	933621..934481 (-)	861	WP_057078044.1	A24 family peptidase	Machinery gene
MTS31_RS04545 (MTS31_04545)	pilC	934481..935707 (-)	1227	WP_029423717.1	type II secretion system F family protein	Machinery gene
MTS31_RS04550 (MTS31_04550)	pilB	935737..937449 (-)	1713	WP_001274991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MTS31_RS04555 (MTS31_04555)	tpiA	937740..938534 (+)	795	WP_029423716.1	triose-phosphate isomerase	-
MTS31_RS04560 (MTS31_04560)	secG	938547..938876 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32126.53 Da Isoelectric Point: 7.1041

                                >NTDB_id=813006 MTS31_RS04540 WP_057078044.1 933621..934481(-) (pilD) [Acinetobacter baumannii strain RAB94]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMFFGLVLTWVLIALTFIDFDTQLLPDR

FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIIYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=813006 MTS31_RS04540 WP_057078044.1 933621..934481(-) (pilD) [Acinetobacter baumannii strain RAB94]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA

ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA

TGTTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTATCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGTATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	97.552	100	0.976
pilD	Acinetobacter nosocomialis M2	97.203	100	0.972
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	46.591	92.308	0.43

Detailed information NTG0813006