Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   MTS96_RS05300 Genome accession   NZ_CP121557
Coordinates   1130653..1131126 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain RAB9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1125653..1136126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS96_RS05285 (MTS96_05285) pilX 1128282..1129100 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MTS96_RS05290 (MTS96_05290) pilW 1129097..1130098 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  MTS96_RS05295 (MTS96_05295) pilV 1130099..1130659 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  MTS96_RS05300 (MTS96_05300) fimU 1130653..1131126 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  MTS96_RS05305 (MTS96_05305) ispH 1131296..1132246 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MTS96_RS05310 (MTS96_05310) gmk 1132369..1132998 (+) 630 WP_000015937.1 guanylate kinase -
  MTS96_RS05315 (MTS96_05315) rpoZ 1133071..1133349 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  MTS96_RS05320 (MTS96_05320) - 1133388..1133517 (+) 130 Protein_1021 hypothetical protein -
  MTS96_RS05325 (MTS96_05325) - 1133557..1135662 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=812904 MTS96_RS05300 WP_001214061.1 1130653..1131126(-) (fimU) [Acinetobacter baumannii strain RAB9]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=812904 MTS96_RS05300 WP_001214061.1 1130653..1131126(-) (fimU) [Acinetobacter baumannii strain RAB9]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987