Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   F6I35_RS10305 Genome accession   NZ_CP136160
Coordinates   1944866..1945456 (-) Length   196 a.a.
NCBI ID   WP_024053223.1    Uniprot ID   A0A412PN27
Organism   Streptococcus anginosus strain UMB8616     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939866..1950456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS10280 (F6I35_0010275) spx 1940208..1940606 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  F6I35_RS10285 (F6I35_0010280) recA 1940693..1941838 (-) 1146 WP_003026640.1 recombinase RecA Machinery gene
  F6I35_RS10290 (F6I35_0010285) cinA 1941883..1943154 (-) 1272 WP_070242126.1 competence/damage-inducible protein A Machinery gene
  F6I35_RS10295 (F6I35_0010290) - 1943864..1944174 (+) 311 Protein_1988 EamA family transporter -
  F6I35_RS10300 (F6I35_0010295) - 1944277..1944855 (-) 579 WP_024053222.1 DNA-3-methyladenine glycosylase I -
  F6I35_RS10305 (F6I35_0010300) ruvA 1944866..1945456 (-) 591 WP_024053223.1 Holliday junction branch migration protein RuvA Machinery gene
  F6I35_RS10310 (F6I35_0010305) - 1945618..1946061 (+) 444 WP_024053224.1 helix-turn-helix domain-containing protein -
  F6I35_RS10315 (F6I35_0010310) hexB 1946466..1948412 (-) 1947 WP_024053225.1 DNA mismatch repair endonuclease MutL Machinery gene
  F6I35_RS10320 (F6I35_0010315) - 1948666..1949106 (+) 441 WP_024053226.1 LytTR family DNA-binding domain-containing protein -
  F6I35_RS10325 (F6I35_0010320) - 1949103..1949561 (+) 459 WP_024053227.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21567.07 Da        Isoelectric Point: 7.1972

>NTDB_id=812901 F6I35_RS10305 WP_024053223.1 1944866..1945456(-) (ruvA) [Streptococcus anginosus strain UMB8616]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIDQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNKELEEAMEAML
ALGYKAAELKKIKKFFEGTNDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=812901 F6I35_RS10305 WP_024053223.1 1944866..1945456(-) (ruvA) [Streptococcus anginosus strain UMB8616]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTTAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGTTTGGTGCAGGCTATTGATCAGAAAAACATCAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACAGCCCAGCAGATGGTGTTGGACTTAGAAGGCAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATAAAGAATTGGAAGAAGCCATGGAAGCCATGCTA
GCTCTGGGATACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTCTTTGAAGGAACCAATGATACCGCGGAAAACTATAT
CAAATCTGCCCTCAAAATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-194)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PN27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

84.264

100

0.847
  ruvA Streptococcus pneumoniae D39

84.264

100

0.847
  ruvA Streptococcus pneumoniae TIGR4

84.264

100

0.847
  ruvA Bacillus subtilis subsp. subtilis str. 168

40

100

0.418