Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   QA712_RS07025 Genome accession   NZ_CP121539
Coordinates   1285267..1285758 (-) Length   163 a.a.
NCBI ID   WP_047206984.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1280267..1290758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS07025 (QA712_07025) comX 1285267..1285758 (-) 492 WP_047206984.1 hypothetical protein Regulator
  QA712_RS07030 (QA712_07030) ezrA 1286015..1287745 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  QA712_RS07035 (QA712_07035) tsf 1287950..1288978 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  QA712_RS07040 (QA712_07040) rpsB 1289101..1289868 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19790.64 Da        Isoelectric Point: 5.3553

>NTDB_id=812875 QA712_RS07025 WP_047206984.1 1285267..1285758(-) (comX) [Lactococcus lactis strain MA5]
MIYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DED

Nucleotide


Download         Length: 492 bp        

>NTDB_id=812875 QA712_RS07025 WP_047206984.1 1285267..1285758(-) (comX) [Lactococcus lactis strain MA5]
ATGATATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATTGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAGCTAAGACGGAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GATGAAGATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.546

100

0.975
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767