Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QA592_RS08245 Genome accession   NZ_CP121529
Coordinates   1769179..1770051 (-) Length   290 a.a.
NCBI ID   WP_001829468.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 1FSE03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1730721..1801595 1769179..1770051 within 0


Gene organization within MGE regions


Location: 1730721..1801595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA592_RS08100 - 1731761..1733032 (-) 1272 WP_002439538.1 pitrilysin family protein -
  QA592_RS08105 - 1733063..1733776 (-) 714 WP_002439536.1 GntR family transcriptional regulator -
  QA592_RS08110 - 1733779..1736172 (-) 2394 WP_002439534.1 DNA translocase FtsK -
  QA592_RS08115 - 1736438..1738111 (-) 1674 WP_002457357.1 ribonuclease J -
  QA592_RS08120 pnp 1738479..1740584 (-) 2106 WP_001832554.1 polyribonucleotide nucleotidyltransferase -
  QA592_RS08125 rpsO 1740716..1740985 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  QA592_RS08130 - 1741105..1742076 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  QA592_RS08135 truB 1742092..1743009 (-) 918 WP_002456563.1 tRNA pseudouridine(55) synthase TruB -
  QA592_RS08140 rbfA 1743147..1743497 (-) 351 WP_001829509.1 30S ribosome-binding factor RbfA -
  QA592_RS08145 infB 1743800..1745962 (-) 2163 WP_002468903.1 translation initiation factor IF-2 -
  QA592_RS08150 - 1745967..1746284 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  QA592_RS08155 - 1746284..1746568 (-) 285 WP_001829465.1 YlxR family protein -
  QA592_RS08160 nusA 1746586..1747809 (-) 1224 WP_259980298.1 transcription termination factor NusA -
  QA592_RS08165 rimP 1747830..1748297 (-) 468 WP_002439519.1 ribosome maturation factor RimP -
  QA592_RS08170 - 1748476..1752786 (-) 4311 WP_002456566.1 PolC-type DNA polymerase III -
  QA592_RS08175 - 1753036..1754739 (-) 1704 WP_001829513.1 proline--tRNA ligase -
  QA592_RS08180 rseP 1754758..1756044 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  QA592_RS08185 - 1756278..1757060 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  QA592_RS08190 - 1757064..1757834 (-) 771 WP_001832561.1 isoprenyl transferase -
  QA592_RS08195 frr 1758055..1758609 (-) 555 WP_001829472.1 ribosome recycling factor -
  QA592_RS08200 pyrH 1758626..1759348 (-) 723 WP_002439511.1 UMP kinase -
  QA592_RS08205 tsf 1759489..1760367 (-) 879 WP_002439509.1 translation elongation factor Ts -
  QA592_RS08210 rpsB 1760519..1761307 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  QA592_RS08215 codY 1761666..1762439 (-) 774 WP_002446289.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QA592_RS08220 hslU 1762463..1763866 (-) 1404 WP_002469380.1 ATP-dependent protease ATPase subunit HslU -
  QA592_RS08225 hslV 1763935..1764477 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  QA592_RS08230 xerC 1764481..1765371 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  QA592_RS08235 trmFO 1765596..1766903 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QA592_RS08240 topA 1766928..1768997 (-) 2070 WP_001829508.1 type I DNA topoisomerase -
  QA592_RS08245 dprA 1769179..1770051 (-) 873 WP_001829468.1 DNA-processing protein DprA Machinery gene
  QA592_RS08250 - 1770392..1770607 (-) 216 Protein_1592 IS200/IS605 family transposase -
  QA592_RS08255 sucD 1770857..1771765 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  QA592_RS08260 sucC 1771787..1772953 (-) 1167 WP_002456569.1 ADP-forming succinate--CoA ligase subunit beta -
  QA592_RS08265 - 1773061..1773831 (-) 771 WP_001829514.1 ribonuclease HII -
  QA592_RS08270 ylqF 1773836..1774699 (-) 864 WP_001829495.1 ribosome biogenesis GTPase YlqF -
  QA592_RS08275 - 1775028..1777628 (+) 2601 WP_002456571.1 YfhO family protein -
  QA592_RS08280 - 1777621..1780224 (+) 2604 WP_002456572.1 YfhO family protein -
  QA592_RS08285 rplS 1780754..1781104 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  QA592_RS08290 trmD 1781210..1781947 (-) 738 WP_001829466.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QA592_RS08295 rimM 1781947..1782450 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  QA592_RS08300 rpsP 1782577..1782852 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  QA592_RS08305 ffh 1783160..1784527 (-) 1368 WP_001830113.1 signal recognition particle protein -
  QA592_RS08310 - 1784558..1784890 (-) 333 WP_002457379.1 putative DNA-binding protein -
  QA592_RS08315 ftsY 1784892..1786118 (-) 1227 WP_002456573.1 signal recognition particle-docking protein FtsY -
  QA592_RS08320 smc 1786115..1789684 (-) 3570 WP_002456574.1 chromosome segregation protein SMC -
  QA592_RS08325 rnc 1789811..1790548 (-) 738 WP_002456575.1 ribonuclease III -
  QA592_RS08330 - 1790663..1790896 (-) 234 WP_001830184.1 acyl carrier protein -
  QA592_RS08335 fabG 1791124..1791858 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QA592_RS08340 fabD 1791851..1792777 (-) 927 WP_002469385.1 ACP S-malonyltransferase -
  QA592_RS08345 plsX 1792779..1793756 (-) 978 WP_002469384.1 phosphate acyltransferase PlsX -
  QA592_RS08350 fapR 1793758..1794318 (-) 561 WP_001830099.1 transcription factor FapR -
  QA592_RS08355 recG 1794477..1796525 (-) 2049 WP_002456579.1 ATP-dependent DNA helicase RecG -
  QA592_RS08360 fakA 1796729..1798387 (-) 1659 WP_002456580.1 fatty acid kinase catalytic subunit FakA -
  QA592_RS08365 - 1798402..1798776 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  QA592_RS08370 rpmB 1799134..1799322 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  QA592_RS08375 - 1799405..1800040 (-) 636 WP_001830164.1 thiamine diphosphokinase -
  QA592_RS08380 rpe 1800045..1800689 (-) 645 WP_002469381.1 ribulose-phosphate 3-epimerase -
  QA592_RS08385 rsgA 1800690..1801565 (-) 876 WP_002469378.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33726.62 Da        Isoelectric Point: 9.3618

>NTDB_id=812837 QA592_RS08245 WP_001829468.1 1769179..1770051(-) (dprA) [Staphylococcus epidermidis strain 1FSE03]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=812837 QA592_RS08245 WP_001829468.1 1769179..1770051(-) (dprA) [Staphylococcus epidermidis strain 1FSE03]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.944

99.31

0.566
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566