Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA592_RS04515 Genome accession   NZ_CP121529
Coordinates   981856..982251 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 1FSE03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 976856..987251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA592_RS04490 - 978275..978679 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  QA592_RS04495 - 978828..979061 (+) 234 WP_002456242.1 DUF1146 family protein -
  QA592_RS04500 murA 979171..980436 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA592_RS04505 fabZ 980470..980907 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA592_RS04510 - 981225..981665 (-) 441 WP_001829935.1 YwpF-like family protein -
  QA592_RS04515 ssb 981856..982251 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  QA592_RS04520 - 982639..983298 (+) 660 WP_001829904.1 transglycosylase family protein -
  QA592_RS04525 tenA 983582..984271 (+) 690 WP_278275552.1 thiaminase II -
  QA592_RS04530 thiD 984264..985085 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA592_RS04535 thiM 985078..985866 (+) 789 WP_002469583.1 hydroxyethylthiazole kinase -
  QA592_RS04540 thiE 985872..986510 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=812820 QA592_RS04515 WP_002457121.1 981856..982251(+) (ssb) [Staphylococcus epidermidis strain 1FSE03]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812820 QA592_RS04515 WP_002457121.1 981856..982251(+) (ssb) [Staphylococcus epidermidis strain 1FSE03]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733