Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   KI220_RS06540 Genome accession   NZ_AP023088
Coordinates   1295388..1295786 (-) Length   132 a.a.
NCBI ID   WP_059230704.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290388..1300786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS06515 (RSC1_01294) - 1290716..1291399 (-) 684 WP_020450090.1 amino acid ABC transporter permease -
  KI220_RS06520 (RSC1_01295) - 1291411..1292286 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  KI220_RS06525 (RSC1_01296) - 1292470..1293021 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  KI220_RS06530 (RSC1_01297) - 1293117..1293842 (+) 726 WP_035337274.1 AAA family ATPase -
  KI220_RS06535 (RSC1_01298) - 1293912..1295348 (+) 1437 WP_059230706.1 family 1 glycosylhydrolase -
  KI220_RS06540 (RSC1_01299) nin/comJ 1295388..1295786 (-) 399 WP_059230704.1 competence protein ComJ Regulator
  KI220_RS06545 (RSC1_01300) nucA/comI 1295804..1296250 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KI220_RS06550 (RSC1_01301) - 1296553..1296723 (+) 171 WP_023855671.1 hypothetical protein -
  KI220_RS06555 (RSC1_01302) - 1296801..1297532 (+) 732 WP_331837644.1 protein kinase family protein -
  KI220_RS06560 (RSC1_01303) - 1297856..1298596 (-) 741 WP_130569397.1 LXG domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14929.04 Da        Isoelectric Point: 5.6541

>NTDB_id=81281 KI220_RS06540 WP_059230704.1 1295388..1295786(-) (nin/comJ) [Bacillus paralicheniformis strain RSC-1]
MIKKWEAEEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTAGEHAVSFEALDNTASLVEVRLNVQEQVPSFNRRVTVSF
DVLHGGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDKSSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=81281 KI220_RS06540 WP_059230704.1 1295388..1295786(-) (nin/comJ) [Bacillus paralicheniformis strain RSC-1]
TTGATCAAAAAGTGGGAAGCAGAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAGCGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACGGCATCATTAGTAGAAGTTCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGGCGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATAAAAGCAGCACTGCGAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

51.562

96.97

0.5

Multiple sequence alignment