Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KI220_RS06545 Genome accession   NZ_AP023088
Coordinates   1295804..1296250 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain RSC-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1290804..1301250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS06520 (RSC1_01295) - 1291411..1292286 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  KI220_RS06525 (RSC1_01296) - 1292470..1293021 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  KI220_RS06530 (RSC1_01297) - 1293117..1293842 (+) 726 WP_035337274.1 AAA family ATPase -
  KI220_RS06535 (RSC1_01298) - 1293912..1295348 (+) 1437 WP_059230706.1 family 1 glycosylhydrolase -
  KI220_RS06540 (RSC1_01299) nin/comJ 1295388..1295786 (-) 399 WP_059230704.1 competence protein ComJ Regulator
  KI220_RS06545 (RSC1_01300) nucA/comI 1295804..1296250 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KI220_RS06550 (RSC1_01301) - 1296553..1296723 (+) 171 WP_023855671.1 hypothetical protein -
  KI220_RS06555 (RSC1_01302) - 1296801..1297532 (+) 732 WP_331837644.1 protein kinase family protein -
  KI220_RS06560 (RSC1_01303) - 1297856..1298596 (-) 741 WP_130569397.1 LXG domain-containing protein -
  KI220_RS06565 (RSC1_01304) - 1299000..1301054 (+) 2055 WP_075212963.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=81282 KI220_RS06545 WP_020450096.1 1295804..1296250(-) (nucA/comI) [Bacillus paralicheniformis strain RSC-1]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=81282 KI220_RS06545 WP_020450096.1 1295804..1296250(-) (nucA/comI) [Bacillus paralicheniformis strain RSC-1]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635

Multiple sequence alignment