Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QA586_RS04165 Genome accession   NZ_CP121527
Coordinates   865465..866337 (-) Length   290 a.a.
NCBI ID   WP_001829468.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 1FSE01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 827006..897881 865465..866337 within 0


Gene organization within MGE regions


Location: 827006..897881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA586_RS04020 - 828046..829317 (-) 1272 WP_002439538.1 pitrilysin family protein -
  QA586_RS04025 - 829348..830061 (-) 714 WP_002439536.1 GntR family transcriptional regulator -
  QA586_RS04030 - 830064..832457 (-) 2394 WP_002439534.1 DNA translocase FtsK -
  QA586_RS04035 - 832723..834396 (-) 1674 WP_002457357.1 ribonuclease J -
  QA586_RS04040 pnp 834764..836869 (-) 2106 WP_001832554.1 polyribonucleotide nucleotidyltransferase -
  QA586_RS04045 rpsO 837001..837270 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  QA586_RS04050 - 837390..838361 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  QA586_RS04055 truB 838377..839294 (-) 918 WP_002456563.1 tRNA pseudouridine(55) synthase TruB -
  QA586_RS04060 rbfA 839432..839782 (-) 351 WP_001829509.1 30S ribosome-binding factor RbfA -
  QA586_RS04065 infB 840085..842247 (-) 2163 WP_002468903.1 translation initiation factor IF-2 -
  QA586_RS04070 - 842252..842569 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  QA586_RS04075 - 842569..842853 (-) 285 WP_001829465.1 YlxR family protein -
  QA586_RS04080 nusA 842871..844094 (-) 1224 WP_002456565.1 transcription termination factor NusA -
  QA586_RS04085 rimP 844115..844582 (-) 468 WP_002439519.1 ribosome maturation factor RimP -
  QA586_RS04090 - 844761..849071 (-) 4311 WP_002456566.1 PolC-type DNA polymerase III -
  QA586_RS04095 - 849321..851024 (-) 1704 WP_001829513.1 proline--tRNA ligase -
  QA586_RS04100 rseP 851043..852329 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  QA586_RS04105 - 852563..853345 (-) 783 WP_278276466.1 phosphatidate cytidylyltransferase -
  QA586_RS04110 - 853349..854119 (-) 771 WP_001832561.1 isoprenyl transferase -
  QA586_RS04115 frr 854340..854894 (-) 555 WP_001829472.1 ribosome recycling factor -
  QA586_RS04120 pyrH 854911..855633 (-) 723 WP_002439511.1 UMP kinase -
  QA586_RS04125 tsf 855774..856652 (-) 879 WP_002439509.1 translation elongation factor Ts -
  QA586_RS04130 rpsB 856804..857592 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  QA586_RS04135 codY 857951..858724 (-) 774 WP_002446289.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QA586_RS04140 hslU 858748..860151 (-) 1404 WP_278276467.1 ATP-dependent protease ATPase subunit HslU -
  QA586_RS04145 hslV 860220..860762 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  QA586_RS04150 xerC 860766..861656 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  QA586_RS04155 trmFO 861881..863188 (-) 1308 WP_278276468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QA586_RS04160 topA 863213..865282 (-) 2070 WP_001829508.1 type I DNA topoisomerase -
  QA586_RS04165 dprA 865465..866337 (-) 873 WP_001829468.1 DNA-processing protein DprA Machinery gene
  QA586_RS04170 - 866678..866893 (-) 216 Protein_780 IS200/IS605 family transposase -
  QA586_RS04175 sucD 867143..868051 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  QA586_RS04180 sucC 868073..869239 (-) 1167 WP_002456569.1 ADP-forming succinate--CoA ligase subunit beta -
  QA586_RS04185 - 869347..870117 (-) 771 WP_001829514.1 ribonuclease HII -
  QA586_RS04190 ylqF 870122..870985 (-) 864 WP_001829495.1 ribosome biogenesis GTPase YlqF -
  QA586_RS04195 - 871006..871155 (-) 150 WP_162154119.1 hypothetical protein -
  QA586_RS04200 - 871314..873914 (+) 2601 WP_002456571.1 YfhO family protein -
  QA586_RS04205 - 873907..876510 (+) 2604 WP_002456572.1 YfhO family protein -
  QA586_RS04210 rplS 877040..877390 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  QA586_RS04215 trmD 877496..878233 (-) 738 WP_001829466.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QA586_RS04220 rimM 878233..878736 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  QA586_RS04225 rpsP 878863..879138 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  QA586_RS04230 ffh 879446..880813 (-) 1368 WP_001830113.1 signal recognition particle protein -
  QA586_RS04235 - 880844..881176 (-) 333 WP_002457379.1 putative DNA-binding protein -
  QA586_RS04240 ftsY 881178..882404 (-) 1227 WP_002456573.1 signal recognition particle-docking protein FtsY -
  QA586_RS04245 smc 882401..885970 (-) 3570 WP_002497629.1 chromosome segregation protein SMC -
  QA586_RS04250 rnc 886097..886834 (-) 738 WP_002456575.1 ribonuclease III -
  QA586_RS04255 - 886949..887182 (-) 234 WP_001830184.1 acyl carrier protein -
  QA586_RS04260 fabG 887410..888144 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QA586_RS04265 fabD 888137..889063 (-) 927 WP_134298551.1 ACP S-malonyltransferase -
  QA586_RS04270 plsX 889065..890042 (-) 978 WP_002469384.1 phosphate acyltransferase PlsX -
  QA586_RS04275 fapR 890044..890604 (-) 561 WP_001830099.1 transcription factor FapR -
  QA586_RS04280 recG 890763..892811 (-) 2049 WP_002456579.1 ATP-dependent DNA helicase RecG -
  QA586_RS04285 fakA 893015..894673 (-) 1659 WP_002456580.1 fatty acid kinase catalytic subunit FakA -
  QA586_RS04290 - 894688..895062 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  QA586_RS04295 rpmB 895420..895608 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  QA586_RS04300 - 895691..896326 (-) 636 WP_001830164.1 thiamine diphosphokinase -
  QA586_RS04305 rpe 896331..896975 (-) 645 WP_001830173.1 ribulose-phosphate 3-epimerase -
  QA586_RS04310 rsgA 896976..897851 (-) 876 WP_002469378.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33726.62 Da        Isoelectric Point: 9.3618

>NTDB_id=812795 QA586_RS04165 WP_001829468.1 865465..866337(-) (dprA) [Staphylococcus epidermidis strain 1FSE01]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=812795 QA586_RS04165 WP_001829468.1 865465..866337(-) (dprA) [Staphylococcus epidermidis strain 1FSE01]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.944

99.31

0.566
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566