Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA624_RS08810 Genome accession   NZ_CP121526
Coordinates   1504404..1504799 (-) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 1FSE05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1499404..1509799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA624_RS08785 thiE 1500145..1500783 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  QA624_RS08790 thiM 1500789..1501577 (-) 789 WP_002469583.1 hydroxyethylthiazole kinase -
  QA624_RS08795 thiD 1501570..1502391 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA624_RS08800 tenA 1502384..1503073 (-) 690 WP_278275552.1 thiaminase II -
  QA624_RS08805 - 1503357..1504016 (-) 660 WP_001829904.1 transglycosylase family protein -
  QA624_RS08810 ssb 1504404..1504799 (-) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  QA624_RS08815 - 1504990..1505430 (+) 441 WP_001829935.1 YwpF-like family protein -
  QA624_RS08820 fabZ 1505748..1506185 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA624_RS08825 murA 1506219..1507484 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA624_RS08830 - 1507594..1507827 (-) 234 WP_002456242.1 DUF1146 family protein -
  QA624_RS08835 - 1507976..1508380 (-) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=812767 QA624_RS08810 WP_002457121.1 1504404..1504799(-) (ssb) [Staphylococcus epidermidis strain 1FSE05]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812767 QA624_RS08810 WP_002457121.1 1504404..1504799(-) (ssb) [Staphylococcus epidermidis strain 1FSE05]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733