Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QA594_RS09900 Genome accession   NZ_CP121518
Coordinates   2085974..2087041 (-) Length   355 a.a.
NCBI ID   WP_024051203.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 6DSE07     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080974..2092041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA594_RS09865 gcvPA 2081165..2082511 (-) 1347 WP_099797722.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QA594_RS09870 gcvT 2082531..2083622 (-) 1092 WP_099797720.1 glycine cleavage system aminomethyltransferase GcvT -
  QA594_RS09875 - 2083840..2084352 (-) 513 WP_002497929.1 shikimate kinase -
  QA594_RS09880 - 2084517..2085008 (-) 492 WP_002440043.1 competence type IV pilus minor pilin ComGF -
  QA594_RS09885 - 2084932..2085225 (-) 294 WP_099797718.1 hypothetical protein -
  QA594_RS09890 comGD 2085212..2085649 (-) 438 WP_001831025.1 competence type IV pilus minor pilin ComGD -
  QA594_RS09895 comGC 2085639..2085956 (-) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  QA594_RS09900 comGB 2085974..2087041 (-) 1068 WP_024051203.1 competence type IV pilus assembly protein ComGB Machinery gene
  QA594_RS09905 comGA 2087013..2087987 (-) 975 WP_024051204.1 competence type IV pilus ATPase ComGA Machinery gene
  QA594_RS09910 - 2088043..2088666 (-) 624 WP_002446535.1 MBL fold metallo-hydrolase -
  QA594_RS09915 - 2088666..2088992 (-) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  QA594_RS09920 - 2088992..2089978 (-) 987 WP_001831113.1 ROK family glucokinase -
  QA594_RS09925 - 2089978..2090178 (-) 201 WP_001831138.1 YqgQ family protein -
  QA594_RS09930 - 2090162..2091622 (-) 1461 WP_001832757.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42360.63 Da        Isoelectric Point: 10.1330

>NTDB_id=812696 QA594_RS09900 WP_024051203.1 2085974..2087041(-) (comGB) [Staphylococcus epidermidis strain 6DSE07]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVHIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=812696 QA594_RS09900 WP_024051203.1 2085974..2087041(-) (comGB) [Staphylococcus epidermidis strain 6DSE07]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCATATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.719

100

0.499
  comGB Staphylococcus aureus N315

49.719

100

0.499