Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA605_RS04540 Genome accession   NZ_CP121513
Coordinates   971721..972116 (+) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain 20DL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 966721..977116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA605_RS04515 - 968140..968544 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  QA605_RS04520 - 968693..968926 (+) 234 WP_002456242.1 DUF1146 family protein -
  QA605_RS04525 murA 969036..970301 (+) 1266 WP_278275630.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA605_RS04530 fabZ 970335..970772 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA605_RS04535 - 971090..971530 (-) 441 WP_001829935.1 YwpF-like family protein -
  QA605_RS04540 ssb 971721..972116 (+) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  QA605_RS04545 - 972504..973163 (+) 660 WP_001829904.1 transglycosylase family protein -
  QA605_RS04550 tenA 973448..974137 (+) 690 WP_001829894.1 thiaminase II -
  QA605_RS04555 thiD 974130..974951 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA605_RS04560 thiM 974944..975732 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  QA605_RS04565 thiE 975738..976376 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=812648 QA605_RS04540 WP_001829977.1 971721..972116(+) (ssb) [Staphylococcus epidermidis strain 20DL]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812648 QA605_RS04540 WP_001829977.1 971721..972116(+) (ssb) [Staphylococcus epidermidis strain 20DL]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725