Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KI220_RS00995 Genome accession   NZ_AP023088
Coordinates   193346..193627 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain RSC-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 188346..198627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS00975 (RSC1_00199) smpB 189158..189631 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  KI220_RS00980 (RSC1_00200) rnr 189747..192050 (-) 2304 WP_020452983.1 ribonuclease R -
  KI220_RS00985 (RSC1_00201) - 192064..192810 (-) 747 WP_035337713.1 carboxylesterase -
  KI220_RS00990 (RSC1_00202) secG 192951..193181 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  KI220_RS00995 (RSC1_00203) abrB 193346..193627 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KI220_RS01000 (RSC1_00204) - 193656..193889 (-) 234 WP_164470226.1 helix-turn-helix transcriptional regulator -
  KI220_RS01005 (RSC1_00205) - 194042..194443 (+) 402 WP_020452987.1 transcriptional regulator -
  KI220_RS01010 (RSC1_00206) - 194616..195014 (+) 399 WP_023856314.1 helix-turn-helix transcriptional regulator -
  KI220_RS01015 (RSC1_00207) - 195063..195740 (-) 678 WP_020452989.1 ABC transporter permease -
  KI220_RS01020 (RSC1_00208) opuCC 195757..196674 (-) 918 WP_020452990.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  KI220_RS01025 (RSC1_00209) - 196688..197341 (-) 654 WP_020452991.1 ABC transporter permease -
  KI220_RS01030 (RSC1_00210) - 197363..198502 (-) 1140 WP_020452992.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=81262 KI220_RS00995 WP_020452985.1 193346..193627(-) (abrB) [Bacillus paralicheniformis strain RSC-1]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=81262 KI220_RS00995 WP_020452985.1 193346..193627(-) (abrB) [Bacillus paralicheniformis strain RSC-1]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCAGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548

Multiple sequence alignment