Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA588_RS04940 Genome accession   NZ_CP121507
Coordinates   1071804..1072199 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 23DSE01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1066804..1077199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA588_RS04915 - 1068223..1068627 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  QA588_RS04920 - 1068776..1069009 (+) 234 WP_002456242.1 DUF1146 family protein -
  QA588_RS04925 murA 1069119..1070384 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA588_RS04930 fabZ 1070418..1070855 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA588_RS04935 - 1071173..1071613 (-) 441 WP_001829935.1 YwpF-like family protein -
  QA588_RS04940 ssb 1071804..1072199 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  QA588_RS04945 - 1072587..1073246 (+) 660 WP_001829904.1 transglycosylase family protein -
  QA588_RS04950 tenA 1073530..1074219 (+) 690 WP_001829894.1 thiaminase II -
  QA588_RS04955 thiD 1074212..1075033 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA588_RS04960 thiM 1075026..1075814 (+) 789 WP_002469583.1 hydroxyethylthiazole kinase -
  QA588_RS04965 thiE 1075820..1076458 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=812580 QA588_RS04940 WP_002457121.1 1071804..1072199(+) (ssb) [Staphylococcus epidermidis strain 23DSE01]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812580 QA588_RS04940 WP_002457121.1 1071804..1072199(+) (ssb) [Staphylococcus epidermidis strain 23DSE01]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733