Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | QA608_RS03135 | Genome accession | NZ_CP121502 |
| Coordinates | 649002..649874 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain 24FSE01 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 614942..659053 | 649002..649874 | within | 0 |
Gene organization within MGE regions
Location: 614942..659053
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QA608_RS02985 | rsgA | 615581..616456 (+) | 876 | WP_002469378.1 | ribosome small subunit-dependent GTPase A | - |
| QA608_RS02990 | rpe | 616457..617101 (+) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| QA608_RS02995 | - | 617106..617741 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| QA608_RS03000 | - | 618016..619743 (+) | 1728 | WP_278269719.1 | IS1182-like element ISSep1 family transposase | - |
| QA608_RS03005 | rpmB | 619733..619921 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| QA608_RS03010 | - | 620279..620653 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| QA608_RS03015 | fakA | 620668..622326 (+) | 1659 | WP_002456580.1 | fatty acid kinase catalytic subunit FakA | - |
| QA608_RS03020 | recG | 622530..624577 (+) | 2048 | Protein_596 | ATP-dependent DNA helicase RecG | - |
| QA608_RS03025 | fapR | 624736..625296 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| QA608_RS03030 | plsX | 625298..626275 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| QA608_RS03035 | fabD | 626277..627203 (+) | 927 | WP_002469385.1 | ACP S-malonyltransferase | - |
| QA608_RS03040 | fabG | 627196..627930 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| QA608_RS03045 | - | 628158..628391 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| QA608_RS03050 | rnc | 628506..629243 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| QA608_RS03055 | smc | 629370..632939 (+) | 3570 | WP_002497629.1 | chromosome segregation protein SMC | - |
| QA608_RS03060 | ftsY | 632936..634162 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| QA608_RS03065 | - | 634164..634496 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| QA608_RS03070 | ffh | 634527..635894 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| QA608_RS03075 | rpsP | 636202..636477 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| QA608_RS03080 | rimM | 636604..637107 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| QA608_RS03085 | trmD | 637107..637844 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| QA608_RS03090 | rplS | 637950..638300 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| QA608_RS03095 | - | 638830..641432 (-) | 2603 | Protein_611 | YfhO family protein | - |
| QA608_RS03100 | - | 641425..644025 (-) | 2601 | WP_002456571.1 | YfhO family protein | - |
| QA608_RS03105 | - | 644184..644333 (+) | 150 | WP_162154119.1 | hypothetical protein | - |
| QA608_RS03110 | ylqF | 644354..645217 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| QA608_RS03115 | - | 645222..645992 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| QA608_RS03120 | sucC | 646100..647266 (+) | 1167 | WP_002456569.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| QA608_RS03125 | sucD | 647288..648196 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| QA608_RS03130 | - | 648446..648661 (+) | 216 | Protein_618 | IS200/IS605 family transposase | - |
| QA608_RS03135 | dprA | 649002..649874 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| QA608_RS03140 | topA | 650056..652125 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| QA608_RS03145 | trmFO | 652150..653457 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| QA608_RS03150 | xerC | 653681..654571 (+) | 891 | WP_002456225.1 | tyrosine recombinase XerC | - |
| QA608_RS03155 | hslV | 654575..655117 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| QA608_RS03160 | hslU | 655186..656589 (+) | 1404 | WP_002469380.1 | ATP-dependent protease ATPase subunit HslU | - |
| QA608_RS03165 | codY | 656613..657386 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| QA608_RS03170 | rpsB | 657745..658533 (+) | 789 | WP_278269714.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=812544 QA608_RS03135 WP_001829468.1 649002..649874(+) (dprA) [Staphylococcus epidermidis strain 24FSE01]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=812544 QA608_RS03135 WP_001829468.1 649002..649874(+) (dprA) [Staphylococcus epidermidis strain 24FSE01]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |