Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA611_RS04485 Genome accession   NZ_CP121497
Coordinates   957576..957971 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 24FSE04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 952576..962971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA611_RS04460 - 953995..954399 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  QA611_RS04465 - 954548..954781 (+) 234 WP_278270016.1 DUF1146 family protein -
  QA611_RS04470 murA 954891..956156 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA611_RS04475 fabZ 956190..956627 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA611_RS04480 - 956945..957385 (-) 441 WP_001829935.1 YwpF-like family protein -
  QA611_RS04485 ssb 957576..957971 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  QA611_RS04490 - 958359..959018 (+) 660 WP_001829904.1 transglycosylase family protein -
  QA611_RS04495 tenA 959303..959992 (+) 690 WP_001829894.1 thiaminase II -
  QA611_RS04500 thiD 959985..960806 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA611_RS04505 thiM 960799..961587 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  QA611_RS04510 thiE 961593..962231 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=812512 QA611_RS04485 WP_002457121.1 957576..957971(+) (ssb) [Staphylococcus epidermidis strain 24FSE04]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812512 QA611_RS04485 WP_002457121.1 957576..957971(+) (ssb) [Staphylococcus epidermidis strain 24FSE04]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733