Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA591_RS00775 Genome accession   NZ_CP121486
Coordinates   155815..156210 (-) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 32FSE02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 150815..161210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA591_RS00750 thiE 151557..152194 (-) 638 Protein_140 thiamine phosphate synthase -
  QA591_RS00755 thiM 152200..152988 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  QA591_RS00760 thiD 152981..153802 (-) 822 WP_002495290.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA591_RS00765 tenA 153795..154484 (-) 690 WP_002495291.1 thiaminase II -
  QA591_RS00770 - 154768..155427 (-) 660 WP_001829904.1 transglycosylase family protein -
  QA591_RS00775 ssb 155815..156210 (-) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  QA591_RS00780 - 156401..156841 (+) 441 WP_001829935.1 YwpF-like family protein -
  QA591_RS00785 fabZ 157159..157596 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA591_RS00790 murA 157630..158895 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA591_RS00795 - 159005..159238 (-) 234 WP_002456242.1 DUF1146 family protein -
  QA591_RS00800 - 159387..159791 (-) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=812473 QA591_RS00775 WP_002457121.1 155815..156210(-) (ssb) [Staphylococcus epidermidis strain 32FSE02]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812473 QA591_RS00775 WP_002457121.1 155815..156210(-) (ssb) [Staphylococcus epidermidis strain 32FSE02]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733