Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA590_RS11535 Genome accession   NZ_CP121483
Coordinates   2473381..2473776 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 32FSE07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2468381..2478776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA590_RS11510 - 2469800..2470204 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  QA590_RS11515 - 2470353..2470586 (+) 234 WP_002456242.1 DUF1146 family protein -
  QA590_RS11520 murA 2470696..2471961 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA590_RS11525 fabZ 2471995..2472432 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA590_RS11530 - 2472750..2473190 (-) 441 WP_001829935.1 YwpF-like family protein -
  QA590_RS11535 ssb 2473381..2473776 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  QA590_RS11540 - 2474164..2474823 (+) 660 WP_001829904.1 transglycosylase family protein -
  QA590_RS11545 tenA 2475109..2475798 (+) 690 WP_001829894.1 thiaminase II -
  QA590_RS11550 thiD 2475791..2476612 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA590_RS11555 thiM 2476605..2477393 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  QA590_RS11560 thiE 2477399..2478037 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=812469 QA590_RS11535 WP_002457121.1 2473381..2473776(+) (ssb) [Staphylococcus epidermidis strain 32FSE07]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812469 QA590_RS11535 WP_002457121.1 2473381..2473776(+) (ssb) [Staphylococcus epidermidis strain 32FSE07]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733