Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QA590_RS03635 Genome accession   NZ_CP121483
Coordinates   787032..787904 (-) Length   290 a.a.
NCBI ID   WP_001829468.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 32FSE07     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 748575..819451 787032..787904 within 0


Gene organization within MGE regions


Location: 748575..819451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA590_RS03490 - 749615..750886 (-) 1272 WP_002439538.1 pitrilysin family protein -
  QA590_RS03495 - 750917..751630 (-) 714 WP_002439536.1 GntR family transcriptional regulator -
  QA590_RS03500 - 751633..754026 (-) 2394 WP_002439534.1 DNA translocase FtsK -
  QA590_RS03505 - 754292..755965 (-) 1674 WP_002457357.1 ribonuclease J -
  QA590_RS03510 pnp 756333..758438 (-) 2106 WP_001832554.1 polyribonucleotide nucleotidyltransferase -
  QA590_RS03515 rpsO 758570..758839 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  QA590_RS03520 - 758959..759930 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  QA590_RS03525 truB 759946..760863 (-) 918 WP_049376614.1 tRNA pseudouridine(55) synthase TruB -
  QA590_RS03530 rbfA 761001..761351 (-) 351 WP_002457359.1 30S ribosome-binding factor RbfA -
  QA590_RS03535 infB 761654..763816 (-) 2163 WP_049376615.1 translation initiation factor IF-2 -
  QA590_RS03540 - 763821..764138 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  QA590_RS03545 - 764138..764422 (-) 285 WP_001829465.1 YlxR family protein -
  QA590_RS03550 nusA 764440..765663 (-) 1224 WP_001829457.1 transcription termination factor NusA -
  QA590_RS03555 rimP 765684..766151 (-) 468 WP_002439519.1 ribosome maturation factor RimP -
  QA590_RS03560 - 766330..770639 (-) 4310 Protein_670 PolC-type DNA polymerase III -
  QA590_RS03565 - 770889..772592 (-) 1704 WP_049376617.1 proline--tRNA ligase -
  QA590_RS03570 rseP 772611..773897 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  QA590_RS03575 - 774131..774913 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  QA590_RS03580 - 774917..775687 (-) 771 WP_001832561.1 isoprenyl transferase -
  QA590_RS03585 frr 775908..776462 (-) 555 WP_001829472.1 ribosome recycling factor -
  QA590_RS03590 pyrH 776479..777201 (-) 723 WP_002439511.1 UMP kinase -
  QA590_RS03595 tsf 777341..778219 (-) 879 WP_002439509.1 translation elongation factor Ts -
  QA590_RS03600 rpsB 778371..779159 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  QA590_RS03605 codY 779518..780291 (-) 774 WP_151515905.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QA590_RS03610 hslU 780315..781718 (-) 1404 WP_001829474.1 ATP-dependent protease ATPase subunit HslU -
  QA590_RS03615 hslV 781787..782329 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  QA590_RS03620 xerC 782333..783223 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  QA590_RS03625 trmFO 783448..784755 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QA590_RS03630 topA 784780..786849 (-) 2070 WP_278269402.1 type I DNA topoisomerase -
  QA590_RS03635 dprA 787032..787904 (-) 873 WP_001829468.1 DNA-processing protein DprA Machinery gene
  QA590_RS03640 - 788245..788460 (-) 216 Protein_686 IS200/IS605 family transposase -
  QA590_RS03645 sucD 788711..789619 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  QA590_RS03650 sucC 789641..790807 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  QA590_RS03655 - 790915..791685 (-) 771 WP_001829514.1 ribonuclease HII -
  QA590_RS03660 ylqF 791690..792553 (-) 864 WP_002468554.1 ribosome biogenesis GTPase YlqF -
  QA590_RS03665 - 792882..795482 (+) 2601 WP_278269404.1 YfhO family protein -
  QA590_RS03670 - 795475..798078 (+) 2604 WP_151515907.1 YfhO family protein -
  QA590_RS03675 rplS 798609..798959 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  QA590_RS03680 trmD 799065..799802 (-) 738 WP_001829466.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QA590_RS03685 rimM 799802..800305 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  QA590_RS03690 rpsP 800432..800707 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  QA590_RS03695 ffh 801015..802382 (-) 1368 WP_107511267.1 signal recognition particle protein -
  QA590_RS03700 - 802413..802745 (-) 333 WP_002457379.1 putative DNA-binding protein -
  QA590_RS03705 ftsY 802747..803973 (-) 1227 WP_002456573.1 signal recognition particle-docking protein FtsY -
  QA590_RS03710 smc 803970..807539 (-) 3570 WP_151516630.1 chromosome segregation protein SMC -
  QA590_RS03715 rnc 807666..808403 (-) 738 WP_002456575.1 ribonuclease III -
  QA590_RS03720 - 808518..808751 (-) 234 WP_001830184.1 acyl carrier protein -
  QA590_RS03725 fabG 808979..809713 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QA590_RS03730 fabD 809706..810632 (-) 927 WP_002473278.1 ACP S-malonyltransferase -
  QA590_RS03735 plsX 810634..811611 (-) 978 WP_002469384.1 phosphate acyltransferase PlsX -
  QA590_RS03740 fapR 811613..812173 (-) 561 WP_001830099.1 transcription factor FapR -
  QA590_RS03745 recG 812332..814380 (-) 2049 WP_002494962.1 ATP-dependent DNA helicase RecG -
  QA590_RS03750 fakA 814585..816243 (-) 1659 WP_002489351.1 fatty acid kinase catalytic subunit FakA -
  QA590_RS03755 - 816258..816632 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  QA590_RS03760 rpmB 816990..817178 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  QA590_RS03765 - 817261..817896 (-) 636 WP_002489340.1 thiamine diphosphokinase -
  QA590_RS03770 rpe 817901..818545 (-) 645 WP_001830173.1 ribulose-phosphate 3-epimerase -
  QA590_RS03775 rsgA 818546..819421 (-) 876 WP_002456227.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33726.62 Da        Isoelectric Point: 9.3618

>NTDB_id=812453 QA590_RS03635 WP_001829468.1 787032..787904(-) (dprA) [Staphylococcus epidermidis strain 32FSE07]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=812453 QA590_RS03635 WP_001829468.1 787032..787904(-) (dprA) [Staphylococcus epidermidis strain 32FSE07]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.944

99.31

0.566
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566