Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RTE57_RS23940 Genome accession   NZ_CP135957
Coordinates   4864014..4865423 (+) Length   469 a.a.
NCBI ID   WP_107131089.1    Uniprot ID   -
Organism   Escherichia coli strain MS1657     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4859014..4870423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE57_RS23925 (RTE57_23925) typA 4859174..4860997 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  RTE57_RS23930 (RTE57_23930) glnA 4861370..4862779 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  RTE57_RS23935 (RTE57_23935) glnL 4862953..4864002 (+) 1050 WP_000190574.1 nitrogen regulation protein NR(II) -
  RTE57_RS23940 (RTE57_23940) luxO 4864014..4865423 (+) 1410 WP_107131089.1 nitrogen regulation protein NR(I) Regulator
  RTE57_RS23945 (RTE57_23945) yshB 4865535..4865645 (+) 111 WP_000893994.1 YshB family small membrane protein -
  RTE57_RS23950 (RTE57_23950) hemN 4865878..4867251 (-) 1374 WP_000116096.1 oxygen-independent coproporphyrinogen III oxidase -
  RTE57_RS23955 (RTE57_23955) yihI 4867440..4867949 (-) 510 WP_001295266.1 Der GTPase-activating protein YihI -
  RTE57_RS23960 (RTE57_23960) - 4868068..4868234 (-) 167 Protein_4703 hypothetical protein -
  RTE57_RS23965 (RTE57_23965) yihA 4868531..4869163 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52332.82 Da        Isoelectric Point: 6.5091

>NTDB_id=812435 RTE57_RS23940 WP_107131089.1 4864014..4865423(+) (luxO) [Escherichia coli strain MS1657]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESNVPESTSHMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=812435 RTE57_RS23940 WP_107131089.1 4864014..4865423(+) (luxO) [Escherichia coli strain MS1657]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTTCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCATTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGGATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAGTCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCCGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGTGGCACATTATTCCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTACTGGCAGATGGTCAGTTTTATCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCAACCCACCAGAATCTCGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCGGGAAGATATTCCCCGT
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGAGAGCTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAACCGC
GCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAAACGTACCGGAAAGCACTTCACACATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCACAGCC
AGAGCTGGAACGGACGTTACTGACCACCGCGCTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTTGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39