Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA589_RS11585 Genome accession   NZ_CP121480
Coordinates   2444463..2444858 (+) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain 47FSE01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2439463..2449858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA589_RS11560 - 2440882..2441286 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  QA589_RS11565 - 2441435..2441668 (+) 234 WP_002456242.1 DUF1146 family protein -
  QA589_RS11570 murA 2441778..2443043 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA589_RS11575 fabZ 2443077..2443514 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA589_RS11580 - 2443832..2444272 (-) 441 WP_001829935.1 YwpF-like family protein -
  QA589_RS11585 ssb 2444463..2444858 (+) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  QA589_RS11590 - 2445246..2445905 (+) 660 WP_001829904.1 transglycosylase family protein -
  QA589_RS11595 tenA 2446190..2446879 (+) 690 WP_001829894.1 thiaminase II -
  QA589_RS11600 thiD 2446872..2447692 (+) 821 Protein_2242 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QA589_RS11605 thiM 2447685..2448473 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  QA589_RS11610 thiE 2448479..2449117 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=812434 QA589_RS11585 WP_001829977.1 2444463..2444858(+) (ssb) [Staphylococcus epidermidis strain 47FSE01]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812434 QA589_RS11585 WP_001829977.1 2444463..2444858(+) (ssb) [Staphylococcus epidermidis strain 47FSE01]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725